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comparison macs2_predictd.xml @ 27:16545befe8b5 draft

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author iuc
date Thu, 08 Jan 2015 13:39:36 -0500
parents 59845dc3331f
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26:59845dc3331f 27:16545befe8b5
1 <tool id="macs2_predictd" name="MACS2 predictd" version="2.0.10.0"> 1 <tool id="macs2_predictd" name="MACS2 predictd" version="@VERSION_STRING@.0">
2 <description>Predict 'd' or fragment size from alignment results</description> 2 <description>Predict 'd' or fragment size from alignment results</description>
3 <expand macro="requirements"> 3 <expand macro="requirements">
4 <requirement type="package" version="3.0.1">R_3_0_1</requirement> 4 <requirement type="package" version="3.0.1">R_3_0_1</requirement>
5 <requirement type="package" version="4.1.0">gnu_awk</requirement> 5 <requirement type="package" version="4.1.0">gnu_awk</requirement>
6 </expand> 6 </expand>
44 <data name="outfile_image" from_work_dir="predictd_model.pdf" format="pdf" label="${tool.name} on ${on_string} - X-correlation image" /> 44 <data name="outfile_image" from_work_dir="predictd_model.pdf" format="pdf" label="${tool.name} on ${on_string} - X-correlation image" />
45 </outputs> 45 </outputs>
46 <tests> 46 <tests>
47 <test> 47 <test>
48 <param name="infiles" value="Control_200K.bed,ChIP_200K.bed" ftype="bed" /> 48 <param name="infiles" value="Control_200K.bed,ChIP_200K.bed" ftype="bed" />
49 <param name="effective_genome_size_options_selector" value="3300000000" /> 49 <param name="effective_genome_size_options_selector" value="user_defined" />
50 <param name="gsize" value="3300000000" />
50 <param name="tsize" value="-1.0"/> 51 <param name="tsize" value="-1.0"/>
51 <param name="band_width" value="300"/> 52 <param name="band_width" value="300"/>
52 <param name="mfoldlo" value="5"/> 53 <param name="mfoldlo" value="5"/>
53 <param name="mfoldhi" value="50"/> 54 <param name="mfoldhi" value="50"/>
54 <output name="outfile" file="predictd_on_ChIP_200K_and_Control_200K.txt"/> 55 <output name="outfile" file="predictd_on_ChIP_200K_and_Control_200K.txt"/>
55 <output name="outfile_image" file="predictd_on_ChIP_200K_and_Control_200K.pdf" lines_diff="5"/> 56 <output name="outfile_image" file="predictd_on_ChIP_200K_and_Control_200K.pdf" compare="sim_size"/>
56 </test> 57 </test>
57 </tests> 58 </tests>
58 <help> 59 <help>
59 **What it does** 60 **What it does**
60 61