Mercurial > repos > iuc > macs2

annotate test-data/predictd_on_ChIP_200K_and_Control_200K.txt @ 23:b8b8d3c6dede draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author bgruening
date Tue, 20 May 2014 14:32:46 -0400
parents 35a80f8dda5c
children 16545befe8b5
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
17
35a80f8dda5c Uploaded
iuc
parents:
diff changeset
1 # read alignment files...
35a80f8dda5c Uploaded
iuc
parents:
diff changeset
2 # read treatment tags...
35a80f8dda5c Uploaded
iuc
parents:
diff changeset
3 Detected format is
35a80f8dda5c Uploaded
iuc
parents:
diff changeset
4 Detected format is
35a80f8dda5c Uploaded
iuc
parents:
diff changeset
5 tag size is determined as 86 bps
35a80f8dda5c Uploaded
iuc
parents:
diff changeset
6 # tag size = 86
35a80f8dda5c Uploaded
iuc
parents:
diff changeset
7 # total tags in alignment file
35a80f8dda5c Uploaded
iuc
parents:
diff changeset
8 # Build Peak Model...
35a80f8dda5c Uploaded
iuc
parents:
diff changeset
9 #2 number of paired peaks
35a80f8dda5c Uploaded
iuc
parents:
diff changeset
10 start model_add_line...
35a80f8dda5c Uploaded
iuc
parents:
diff changeset
11 start X-correlation...
35a80f8dda5c Uploaded
iuc
parents:
diff changeset
12 end of X-cor
35a80f8dda5c Uploaded
iuc
parents:
diff changeset
13 # finished!
35a80f8dda5c Uploaded
iuc
parents:
diff changeset
14 # predicted fragment length is 284 bps
35a80f8dda5c Uploaded
iuc
parents:
diff changeset
15 # alternative fragment length(s) may be -246,-230,284 bps
35a80f8dda5c Uploaded
iuc
parents:
diff changeset
16 # Generate R script for model