Mercurial > repos > iuc > limma_voom

comparison limma_voom.xml @ 20:455d6445a6a0 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/limma_voom commit 0cc16fe170b5c8d3b9441177bf2749aa7bddca7b
author iuc
date Wed, 29 May 2019 10:31:02 -0400
parents 04cb660cbf5d
children 2a2ab192ccac
comparison
equal deleted inserted replaced
19:04cb660cbf5d 20:455d6445a6a0
719 </repeat> 719 </repeat>
720 <param name="cfile" value="yes" /> 720 <param name="cfile" value="yes" />
721 <param name="cinfo" value="contrasts.txt" /> 721 <param name="cinfo" value="contrasts.txt" />
722 <param name="normalisationOption" value="TMM" /> 722 <param name="normalisationOption" value="TMM" />
723 <param name="topgenes" value="6" /> 723 <param name="topgenes" value="6" />
724 <output_collection name="outTables" count="2"> 724 <output_collection name="outTables" count="3">
725 <element name="limma-voom_Mut-WT" ftype="tabular" > 725 <element name="limma-voom_Mut-WT" ftype="tabular" >
726 <assert_contents> 726 <assert_contents>
727 <has_text_matching expression="GeneID.*logFC.*AveExpr.*t.*P.Value.*adj.P.Val.*B" /> 727 <has_text_matching expression="GeneID.*logFC.*AveExpr.*t.*P.Value.*adj.P.Val.*B" />
728 <has_text_matching expression="11304.*0.4573" /> 728 <has_text_matching expression="11304.*0.4573" />
729 </assert_contents> 729 </assert_contents>
730 </element> 730 </element>
731 <element name="limma-voom_WT-Mut" ftype="tabular" > 731 <element name="limma-voom_WT-Mut" ftype="tabular" >
732 <assert_contents> 732 <assert_contents>
733 <has_text_matching expression="GeneID.*logFC.*AveExpr.*t.*P.Value.*adj.P.Val.*B" /> 733 <has_text_matching expression="GeneID.*logFC.*AveExpr.*t.*P.Value.*adj.P.Val.*B" />
734 <has_text_matching expression="11304.*-0.4573" /> 734 <has_text_matching expression="11304.*-0.4573" />
735 </assert_contents>
736 </element>
737 <element name="limma-voom_Mut-WT-WT-Mut" ftype="tabular" >
738 <assert_contents>
739 <has_text_matching expression="GeneID.*logFC.*AveExpr.*t.*P.Value.*adj.P.Val.*B" />
740 <has_text_matching expression="11304.*0.9146" />
735 </assert_contents> 741 </assert_contents>
736 </element> 742 </element>
737 </output_collection> 743 </output_collection>
738 </test> 744 </test>
739 </tests> 745 </tests>