# HG changeset patch
# User iuc
# Date 1763667507 0
# Node ID 0004a511bafff793c0bc820ecd36d782ed465a4a
# Parent  73480ee775172e63b1d5a2d30554e1e801858254
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/lexicmap commit eceb4b3a69c5a755feac55801e85eb914a669042

diff -r 73480ee77517 -r 0004a511baff lexicmap.xml
--- a/lexicmap.xml	Fri Sep 26 20:46:49 2025 +0000
+++ b/lexicmap.xml	Thu Nov 20 19:38:27 2025 +0000
@@ -88,8 +88,8 @@
         <param name="query" type="data" format="fasta.gz" label="LexicMap query file" multiple="true"  help=""/>
         <conditional name="db_opts">
             <param name="db_opts_selector" type="select" label="LexiMap index source">
-              <option value="histdb" selected="true">From your history</option>
-              <option value="db">Locally installed LexicMap indexes</option>
+              <option value="histdb">From your history</option>
+              <option value="db" selected="true">Locally installed LexicMap indexes</option>
             </param>
             <when value="histdb">
                 <param name="histdb" type="data" format="lexicmap_index" optional="false" multiple="true" label="LexicMap index" />
@@ -115,8 +115,8 @@
             <param argument="--min-qcov-per-hsp" type="float" optional="true" help="Minimum query coverage (percentage) per HSP." />
             <param argument="--seed-max-dist" value="1000" type="integer" label="Seed max dist" help="Minimum distance between seeds in seed chaining. It should be &lt;= contig interval length in database." />
             <param argument="--seed-max-gap" value="1000" type="integer" label="Seed max gap" help="Minimum gap in seed chaining." />
-            <param argument="--seed-min-prefix" value="15" type="integer" label="Seed min prefix" help="Minimum (prefix/suffix) length of matched seeds (anchors)." />
-            <param argument="--seed-min-single-prefix" value="17" type="integer" label="Seed min single prefix" help="Minimum (prefix/suffix) length of matched seeds (anchors) if there's only one pair of seeds matched." />
+            <param argument="--seed-min-prefix" value="17" type="integer" label="Seed min prefix" help="Minimum (prefix/suffix) length of matched seeds (anchors)." />
+            <param argument="--seed-min-single-prefix" value="19" type="integer" label="Seed min single prefix" help="Minimum (prefix/suffix) length of matched seeds (anchors) if there's only one pair of seeds matched." />
         </section>
     </inputs>
     <outputs>
@@ -276,4 +276,4 @@
     @info@
         ]]></help>
     <expand macro="citations" />
-</tool>
\ No newline at end of file
+</tool>
diff -r 73480ee77517 -r 0004a511baff macros.xml
--- a/macros.xml	Fri Sep 26 20:46:49 2025 +0000
+++ b/macros.xml	Thu Nov 20 19:38:27 2025 +0000
@@ -1,6 +1,6 @@
 <macros>
     <token name="@TOOL_VERSION@">0.8.0</token>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@VERSION_SUFFIX@">1</token>
     <token name="@PROFILE_VERSION@">25.0</token>
     <token name="@FASTA_TYPES@">fasta.gz,fasta</token>
     <xml name="requirements">