Mercurial > repos > iuc > lexicmap

annotate test-data/db.lmi/info.toml @ 4:0004a511baff draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/lexicmap commit eceb4b3a69c5a755feac55801e85eb914a669042
author iuc
date Thu, 20 Nov 2025 19:38:27 +0000
parents 2e6641136004
children
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2e6641136004 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/lexicmap commit d966ed462a49d1949345717ae4fdb685c6a1450a
iuc
parents:
diff changeset
1 # Index format
2e6641136004 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/lexicmap commit d966ed462a49d1949345717ae4fdb685c6a1450a
iuc
parents:
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2 main-version = 3
2e6641136004 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/lexicmap commit d966ed462a49d1949345717ae4fdb685c6a1450a
iuc
parents:
diff changeset
3 minor-version = 4
2e6641136004 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/lexicmap commit d966ed462a49d1949345717ae4fdb685c6a1450a
iuc
parents:
diff changeset
4 # LexicHash
2e6641136004 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/lexicmap commit d966ed462a49d1949345717ae4fdb685c6a1450a
iuc
parents:
diff changeset
5 max-K = 31
2e6641136004 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/lexicmap commit d966ed462a49d1949345717ae4fdb685c6a1450a
iuc
parents:
diff changeset
6 masks = 20000
2e6641136004 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/lexicmap commit d966ed462a49d1949345717ae4fdb685c6a1450a
iuc
parents:
diff changeset
7 rand-seed = 1
2e6641136004 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/lexicmap commit d966ed462a49d1949345717ae4fdb685c6a1450a
iuc
parents:
diff changeset
8 # Seed distance
2e6641136004 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/lexicmap commit d966ed462a49d1949345717ae4fdb685c6a1450a
iuc
parents:
diff changeset
9 max-seed-dist = 100
2e6641136004 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/lexicmap commit d966ed462a49d1949345717ae4fdb685c6a1450a
iuc
parents:
diff changeset
10 seed-dist-in-desert = 50
2e6641136004 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/lexicmap commit d966ed462a49d1949345717ae4fdb685c6a1450a
iuc
parents:
diff changeset
11 # Seeds (k-mer-value data) files
2e6641136004 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/lexicmap commit d966ed462a49d1949345717ae4fdb685c6a1450a
iuc
parents:
diff changeset
12 chunks = 2
2e6641136004 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/lexicmap commit d966ed462a49d1949345717ae4fdb685c6a1450a
iuc
parents:
diff changeset
13 index-partitions = 4096
2e6641136004 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/lexicmap commit d966ed462a49d1949345717ae4fdb685c6a1450a
iuc
parents:
diff changeset
14 # Input genomes
2e6641136004 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/lexicmap commit d966ed462a49d1949345717ae4fdb685c6a1450a
iuc
parents:
diff changeset
15 input-genomes = 1
2e6641136004 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/lexicmap commit d966ed462a49d1949345717ae4fdb685c6a1450a
iuc
parents:
diff changeset
16 # Input bases
2e6641136004 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/lexicmap commit d966ed462a49d1949345717ae4fdb685c6a1450a
iuc
parents:
diff changeset
17 input-bases = 7417
2e6641136004 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/lexicmap commit d966ed462a49d1949345717ae4fdb685c6a1450a
iuc
parents:
diff changeset
18 # Genome data.
2e6641136004 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/lexicmap commit d966ed462a49d1949345717ae4fdb685c6a1450a
iuc
parents:
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19 # 'genomes' might be larger than 'input-genomes', as some big fragmented genomes are split into multiple chunks.
2e6641136004 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/lexicmap commit d966ed462a49d1949345717ae4fdb685c6a1450a
iuc
parents:
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20 # In this case, 'genome-batch-size' is not accurate, being variable in different batches.
2e6641136004 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/lexicmap commit d966ed462a49d1949345717ae4fdb685c6a1450a
iuc
parents:
diff changeset
21 genomes = 1
2e6641136004 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/lexicmap commit d966ed462a49d1949345717ae4fdb685c6a1450a
iuc
parents:
diff changeset
22 genome-batch-size = 1
2e6641136004 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/lexicmap commit d966ed462a49d1949345717ae4fdb685c6a1450a
iuc
parents:
diff changeset
23 genome-batches = 1
2e6641136004 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/lexicmap commit d966ed462a49d1949345717ae4fdb685c6a1450a
iuc
parents:
diff changeset
24 contig-interval = 1000