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comparison test-data/last_align_prot.maf @ 8:bd3a1cc88f0a draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 4568799de240022f4058ec1602e08f536916e2af"
author iuc
date Thu, 25 Mar 2021 20:52:41 +0000
parents 657fb614ee81
children
comparison
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7:657fb614ee81 8:bd3a1cc88f0a
1 # LAST version 1205 1 # LAST version 1205
2 # 2 #
3 # a=11 b=2 A=11 B=2 e=22 d=13 x=21 y=9 z=21 D=1e+06 E=2.73494e+09 3 # a=11 b=2 A=11 B=2 e=22 d=13 x=21 y=9 z=21 D=1e+06 E=2.73494e+09
4 # R=10 u=0 s=1 S=0 M=0 T=0 m=10 l=1 L=999999999 n=10 k=1 w=1000 t=3.08611 j=3 Q=0 4 # R=10 u=0 s=1 S=0 M=0 T=0 m=10 l=1 L=999999999 n=10 k=1 w=1000 t=3.08611 j=3 Q=0
5 # /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/hedgdb 5 # /home/berntm/.planemo/planemo_tmp_vt3pko3h/test-data/hedgdb
6 # Reference sequences=1 normal letters=411 6 # Reference sequences=1 normal letters=411
7 # lambda=0.305935 K=0.102404 7 # lambda=0.305935 K=0.102404
8 # 8 #
9 # A R N D C Q E G H I L K M F P S T W Y V B J Z X * 9 # A R N D C Q E G H I L K M F P S T W Y V B J Z X *
10 # A 4 -1 -2 -2 0 -1 -1 0 -2 -1 -1 -1 -1 -2 -1 1 0 -3 -2 0 -2 -1 -1 -1 -4 10 # A 4 -1 -2 -2 0 -1 -1 0 -2 -1 -1 -1 -1 -2 -1 1 0 -3 -2 0 -2 -1 -1 -1 -4
37 # in the reverse complement of the 2nd sequence are used. 37 # in the reverse complement of the 2nd sequence are used.
38 # 38 #
39 # name start alnSize strand seqSize alignment 39 # name start alnSize strand seqSize alignment
40 # 40 #
41 # batch 0 41 # batch 0
42 a score=729 EG2=1.4e-80 E=1.2e-101
43 s NP_002172.2 13 264 + 411 LVLLLLLVVPA----AWGCGPGRVVGSRRRPPRKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDRLNSLAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYGLLARLAVEAGFDWVYYESKAHVHCSVKSEHSAAAKTGGCFPAGAQVRLESGARVALSAVRPGDRVLAMGEDGSPTFSDVLIFLDREPHRLRAFQVIETQDPPRRLALTPAHLL
44 s NP_001034065.1 66 265 + 471 LVALLLIVLPMVFSPAHSCGPGRGLGRHRA--RNLYPLVLKQTIPNLSEYTNSASGPLEGVIRRDSPKFKDLVPNYNRDILFRDEEGTGADRLMSKRCKEKLNVLAYSVMNEWPGIRLLVTESWDEDYHHGQESLHYEGRAVTIATSDRDQSKYGMLARLAVEAGFDWVSYVSRRHIYCSVKSDSSISSHVHGCFTPESTALLESGVRKPLGELSIGDRVLSMTANGQAVYSEVILFMDRNLEQMQNFVQLHT-DGGAVLTVTPAHLV
45
46 a score=131 EG2=0.4 E=4.1e-14
47 s NP_002172.2 293 95 + 411 FASHVQPGQYVLVAGVPG--LQPARVAAVSTHVALGAYAPLTKHGTLVVEDVVASCFAAVADHHLAQLAFWPLRLFHSLAWGSWTPG-EGVHWYPQLL
48 s NP_001034065.1 344 96 + 471 FADRIEEKNQVLVRDVETGELRPQRVVKVGSVRSKGVVAPLTREGTIVVNSVAASCYAVINSQSLAHWGLAPMRLLSTLE--AWLPAKEQLHSSPKVV
49
50 a score=50 EG2=2.3e+10 E=0.0037
51 s NP_002172.2 379 23 + 411 GVHWYPQLLYRLGRLLLEEGSFH
52 s NP_001034065.1 447 23 + 471 GIHWYANALYKVKDYVLPQSWRH
53
54 a score=41 EG2=3.7e+11 E=0.06
55 s NP_002172.2 91 34 + 411 KDEENTGADRLMTQRCKDRLNSLAISVMNQWPGV
56 s NP_001034065.1 44 34 + 471 QEETQTMRHIAHTQRCLSRLTSLVALLLIVLPMV
57
58 a score=32 EG2=5.7e+12 E=0.99
59 s NP_002172.2 183 24 + 411 AHVHCSVKSEHSAAAKTGGCFPAG
60 s NP_001034065.1 252 24 + 471 SHVHGCFTPESTALLESGVRKPLG
61
62 a score=31 EG2=7.8e+12 E=1.3
63 s NP_002172.2 146 21 + 411 EGRAVDITTSDRDRNKYGLLA
64 s NP_001034065.1 149 21 + 471 EGTGADRLMSKRCKEKLNVLA
65
66 a score=31 EG2=7.8e+12 E=1.3
67 s NP_002172.2 394 16 + 411 LLEEGSFHPLGMSGAG
68 s NP_001034065.1 265 16 + 471 LLESGVRKPLGELSIG
69
70 a score=30 EG2=1.1e+13 E=1.8
71 s NP_002172.2 23 13 + 411 AAWGCGPGRVVGS
72 s NP_001034065.1 409 13 + 471 AHWGLAPMRLLST
73
74 a score=30 EG2=1.1e+13 E=1.8
75 s NP_002172.2 180 18 + 411 ESKAHVHCSVKSEHSAAA
76 s NP_001034065.1 20 18 + 471 DAKCHSSSSSSSSKSAAS
77
78 a score=28 EG2=2e+13 E=3.4
79 s NP_002172.2 167 20 + 411 RLAVEAGFDWVYYESKAHVH
80 s NP_001034065.1 180 20 + 471 RLLVTESWDEDYHHGQESLH
81
82 a score=28 EG2=2e+13 E=3.4
83 s NP_002172.2 181 20 + 411 SKAHVHCSVKSEHSAAAKTG
84 s NP_001034065.1 428 20 + 471 AKEQLHSSPKVVSSAQQQNG
85
86 a score=26 EG2=3.6e+13 E=6.4
87 s NP_002172.2 233 17 + 411 EDGSPTFSDVLIFLDRE
88 s NP_001034065.1 133 17 + 471 KDLVPNYNRDILFRDEE
89
90 a score=25 EG2=4.9e+13 E=8.7
91 s NP_002172.2 236 14 + 411 SPTFSDVLIFLDRE
92 s NP_001034065.1 129 14 + 471 SPKFKDLVPNYNRD
93
94 a score=24 EG2=6.6e+13 E=12
95 s NP_002172.2 10 16 + 411 HFCLVLLLLLVVPAAW
96 s NP_001034065.1 410 16 + 471 HWGLAPMRLLSTLEAW
97
98 a score=24 EG2=6.6e+13 E=12
99 s NP_002172.2 26 23 + 411 GCGPGRVVGSRRRPPRKLVPLAY
100 s NP_001034065.1 150 21 + 471 GTGADRLMSKRCK--EKLNVLAY
101
102 a score=24 EG2=6.6e+13 E=12
103 s NP_002172.2 48 32 + 411 YKQFSPNVPEKTLGASGRYEGKIARSSERFKE
104 s NP_001034065.1 132 32 + 471 FKDLVPNYNRDILFRDEEGTGADRLMSKRCKE
105
106 a score=24 EG2=6.6e+13 E=12
107 s NP_002172.2 106 27 + 411 CKDRLNSLAISVMNQWPGVKLRVTEGW
108 s NP_001034065.1 399 27 + 471 CYAVINSQSLAHWGLAPMRLLSTLEAW
109
110 a score=24 EG2=6.6e+13 E=12
111 s NP_002172.2 143 8 + 411 LHYEGRAV
112 s NP_001034065.1 314 8 + 471 LHTDGGAV
113
114 a score=24 EG2=6.6e+13 E=12
115 s NP_002172.2 157 14 + 411 RDRNKYGLLARLAV
116 s NP_001034065.1 94 14 + 471 RARNLYPLVLKQTI
117
118 a score=23 EG2=9e+13 E=16
119 s NP_002172.2 20 6 + 411 VVPAAW
120 s NP_001034065.1 462 6 + 471 VLPQSW
121
122 a score=23 EG2=9e+13 E=16
123 s NP_002172.2 146 22 + 411 EGRAVDITTSDRDRNKYGLLAR
124 s NP_001034065.1 336 22 + 471 ESQKLTFVFADRIEEKNQVLVR
125
126 a score=23 EG2=9e+13 E=16
127 s NP_002172.2 173 11 + 411 GFDWVYYESKA
128 s NP_001034065.1 194 11 + 471 GQESLHYEGRA
129
130 a score=23 EG2=9e+13 E=16
131 s NP_002172.2 207 15 + 411 AQVRLESGARVALSA
132 s NP_001034065.1 428 15 + 471 AKEQLHSSPKVVSSA
133
134 a score=23 EG2=9e+13 E=16
135 s NP_002172.2 317 14 + 411 AAVSTHVALGAYAP
136 s NP_001034065.1 248 13 + 471 SSISSHVH-GCFTP
137
138 a score=23 EG2=9e+13 E=16
139 s NP_002172.2 331 13 + 411 LTKHGTLVVEDVV
140 s NP_001034065.1 286 13 + 471 MTANGQAVYSEVI
141
142 a score=23 EG2=9e+13 E=16
143 s NP_002172.2 361 11 + 411 WP-LRLFHSLAW
144 s NP_001034065.1 176 12 + 471 WPGIRLLVTESW
145
146 a score=22 EG2=1.2e+14 E=22
147 s NP_002172.2 264 22 + 411 PPRRLALTPAHLLFTADNHTEP
148 s NP_001034065.1 415 22 + 471 PMRLLSTLEAWLPAKEQLHSSP
149
150 a score=22 EG2=1.2e+14 E=22
151 s NP_002172.2 268 7 + 411 LALTPAH
152 s NP_001034065.1 76 7 + 471 MVFSPAH
153
154 a score=22 EG2=1.2e+14 E=22
155 s NP_002172.2 277 21 + 411 FTADNHTEPAARFRATFASHV
156 s NP_001034065.1 234 21 + 471 YVSRRHIYCSVKSDSSISSHV
157
42 # Query sequences=1 158 # Query sequences=1