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comparison test-data/last_split.maf @ 7:657fb614ee81 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
author iuc
date Wed, 24 Mar 2021 22:35:52 +0000
parents 7f7e48d3b85d
children
comparison
equal deleted inserted replaced
6:713be4796767 7:657fb614ee81
1 # LAST version 1021 1 # LAST version 1205
2 # 2 #
3 # a=7 b=1 A=7 B=1 e=22 d=13 x=21 y=9 z=21 D=1e+06 3 # a=7 b=1 A=7 B=1 e=22 d=13 x=21 y=9 z=21 D=1e+06
4 # R=10 u=0 s=2 S=0 M=0 T=0 m=10 l=1 L=999999999 n=10 k=1 w=1000 t=2.82533 j=3 Q=0 4 # R=10 u=0 s=2 S=0 M=0 T=0 m=10 l=1 L=999999999 n=10 k=1 w=1000 t=2.82533 j=3 Q=0
5 # ref_db 5 # /home/berntm/.planemo/planemo_tmp_3z8peizh/test-data/humdb
6 # Reference sequences=1 normal letters=16571 6 # Reference sequences=1 normal letters=16571
7 # 7 #
8 # A R N D C Q E G H I L K M F P S T W Y V B J Z X * 8 # A R N D C Q E G H I L K M F P S T W Y V B J Z X *
9 # A 5 -2 -2 -2 -1 -1 -1 0 -2 -2 -2 -1 -1 -3 -1 1 0 -3 -2 0 -2 -2 -1 -1 -6 9 # A 5 -2 -2 -2 -1 -1 -1 0 -2 -2 -2 -1 -1 -3 -1 1 0 -3 -2 0 -2 -2 -1 -1 -6
10 # R -2 6 -1 -2 -4 1 -1 -3 0 -3 -3 2 -2 -4 -2 -1 -1 -4 -3 -3 -1 -3 0 -1 -6 10 # R -2 6 -1 -2 -4 1 -1 -3 0 -3 -3 2 -2 -4 -2 -1 -1 -4 -3 -3 -1 -3 0 -1 -6
87 a score=564 mismap=0.000243 acc=AG don=GC 87 a score=564 mismap=0.000243 acc=AG don=GC
88 s humanMito 94 223 + 16571 ACGCTGGAGCCGGAGCACCCTATGTCGCAGTATCTGTCT---TTGATTCCTGCCTCATTCTATTATTTATCGCACCTACGTTCAATATTACAGGCGAACATACCTACTAAAGTGTGTTAATta-attaaTGCT-TGTAGGACATAATAATAACAATTGAATGTCTGCA--CAGCCGCTTTCCACACAGACATCATAACAaaaaatttccac-caaacccccccctcccccc 88 s humanMito 94 223 + 16571 ACGCTGGAGCCGGAGCACCCTATGTCGCAGTATCTGTCT---TTGATTCCTGCCTCATTCTATTATTTATCGCACCTACGTTCAATATTACAGGCGAACATACCTACTAAAGTGTGTTAATta-attaaTGCT-TGTAGGACATAATAATAACAATTGAATGTCTGCA--CAGCCGCTTTCCACACAGACATCATAACAaaaaatttccac-caaacccccccctcccccc
89 s fuguMito 16146 196 + 16447 A-----GTGC---AGCGC-----GTCAATGGTTCA-TCAAGGTTGAA-CAT---TTTTTCT-TGGTTTATGGTA---ATGTTAATTAATGAATTAAGACAT---TATTTAAG------AATTACATTACTGATATCAAGGACATAA--ATAATAATACGAT-TCAACAATCATACAATTTCAcccccttcttctttttaaaaaaatt-aacgtataccccccctacccccc 89 s fuguMito 16146 196 + 16447 A-----GTGC---AGCGC-----GTCAATGGTTCA-TCAAGGTTGAA-CAT---TTTTTCT-TGGTTTATGGTA---ATGTTAATTAATGAATTAAGACAT---TATTTAAG------AATTACATTACTGATATCAAGGACATAA--ATAATAATACGAT-TCAACAATCATACAATTTCAcccccttcttctttttaaaaaaatt-aacgtataccccccctacccccc
90 p 333333336?????@@@@@@@@@@@@@@@@@@@@@@@@@@@@AAAAAABBBBBBCCDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDEEEEEEEEEEEEEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEED@@: 90 p 333333336?????@@@@@@@@@@@@@@@@@@@@@@@@@@@@AAAAAABBBBBBCCDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDEEEEEEEEEEEEEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEED@@:
91 91
92 a score=255 mismap=0.516 acc=AG 92 a score=255 mismap=0.515 acc=AG
93 s humanMito 2030 114 + 16571 ATAGAATCTTAGTTCAA-CTTTAAATTTG-CCCACAGAACCCTCTAAATCCCCTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCTTTGGACACTAGGA-AAAAACCTTGTA 93 s humanMito 2030 114 + 16571 ATAGAATCTTAGTTCAA-CTTTAAATTTG-CCCACAGAACCCTCTAAATCCCCTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCTTTGGACACTAGGA-AAAAACCTTGTA
94 s fuguMito 16342 104 + 16447 ctaAAAAATAGGAGAGACCTTTAAGTTTGAACCA-AG----CTCT----CCActt----aattaaatattcatcatattattatcatatattataatattataataatataattata 94 s fuguMito 16342 104 + 16447 ctaAAAAATAGGAGAGACCTTTAAGTTTGAACCA-AG----CTCT----CCActt----aattaaatattcatcatattattatcatatattataatattataataatataattata
95 p ##################################################################################################################### 95 p #####################################################################################################################
96 96