Mercurial > repos > iuc > last

annotate test-data/last_train.txt @ 10:a07c62dc88f9 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 88d7f81768f05f490f444b646f47241cf2547b44"
author iuc
date Sat, 27 Nov 2021 10:11:58 +0000
parents 657fb614ee81
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
1 # lastal version: 1205
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
2 # maximum percent identity: 100
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
3 # scale of score parameters: 4.5512
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
4 # scale used while training: 91.024
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
5
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
6 # lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -r5 -q5 -a15 -b3 -A15 -B3 /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/humdb /tmp/tmpc7ashbco
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
7
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
8 # aligned letter pairs: 14938.4
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
9 # deletes: 664.28
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
10 # inserts: 839.52
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
11 # delOpens: 344.93
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
12 # insOpens: 404.94
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
13 # alignments: 3
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
14 # mean delete size: 1.92584
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
15 # mean insert size: 2.0732
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
16 # matchProb: 0.951959
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
17 # delOpenProb: 0.0219809
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
18 # insOpenProb: 0.0258051
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
19 # delExtendProb: 0.480746
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
20 # insExtendProb: 0.517653
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
21
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
22 # substitution percent identity: 71.9301
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
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diff changeset
23
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
24 # count matrix (query letters = columns, reference letters = rows):
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
25 # A C G T
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
26 # A 3296.3 533.242 387.82 392.35
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
27 # C 553.59 3241.5 182.39 686.23
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
28 # G 232.64 102.401 1565.4 84.91
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
29 # T 335.174 558.781 147.17 2651
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
30
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
31 # probability matrix (query letters = columns, reference letters = rows):
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
32 # A C G T
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
33 # A 0.220475 0.0356662 0.0259396 0.0262426
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
34 # C 0.0370272 0.21681 0.0121993 0.0458989
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
35 # G 0.0155603 0.00684915 0.104703 0.00567926
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
36 # T 0.0224183 0.0373744 0.00984356 0.177314
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
37
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
38 # delExistCost: 342
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
39 # insExistCost: 341
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
40 # delExtendCost: 65
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
41 # insExtendCost: 58
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
42
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
43 # score matrix (query letters = columns, reference letters = rows):
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
44 # A C G T
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
45 # A 76 -90 -59 -104
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
46 # C -87 73 -128 -55
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
47 # G -89 -164 145 -167
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
48 # T -112 -66 -127 90
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
49
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
50 # lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.1872 -p- /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/humdb /tmp/tmpc7ashbco
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
51
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
52 # aligned letter pairs: 14397.9
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
53 # deletes: 322.93
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
54 # inserts: 481.67
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
55 # delOpens: 166.26
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
56 # insOpens: 218.88
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
57 # alignments: 10
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
58 # mean delete size: 1.94232
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
59 # mean insert size: 2.20061
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
60 # matchProb: 0.973223
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
61 # delOpenProb: 0.0112383
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
62 # insOpenProb: 0.0147951
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
63 # delExtendProb: 0.485152
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
64 # insExtendProb: 0.545581
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
65
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
66 # substitution percent identity: 70.5263
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
67
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
68 # count matrix (query letters = columns, reference letters = rows):
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
69 # A C G T
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
70 # A 3087.2 550.976 415.27 370.69
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
71 # C 567.6 2996 150.293 740.47
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
72 # G 246.31 81.558 1563.06 66.884
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
73 # T 329.603 608.12 121.409 2521.4
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
74
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
75 # probability matrix (query letters = columns, reference letters = rows):
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
76 # A C G T
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
77 # A 0.214138 0.0382175 0.0288045 0.0257123
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
78 # C 0.0393706 0.207812 0.0104248 0.0513615
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
79 # G 0.0170849 0.00565713 0.108419 0.0046393
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
80 # T 0.0228624 0.0421812 0.00842133 0.174893
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
81
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
82 # delExistCost: 404
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
83 # insExistCost: 401
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
84 # delExtendCost: 65
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
85 # insExtendCost: 54
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
86
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
87 # score matrix (query letters = columns, reference letters = rows):
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
88 # A C G T
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
89 # A 76 -81 -49 -104
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
90 # C -78 73 -142 -42
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
91 # G -79 -180 146 -186
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
92 # T -108 -52 -141 89
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
93
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
94 # lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t90.4093 -p- /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/humdb /tmp/tmpc7ashbco
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
95
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
96 # aligned letter pairs: 14586.1
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
97 # deletes: 207.97
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
98 # inserts: 370.61
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
99 # delOpens: 97.51
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
100 # insOpens: 146.118
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
101 # alignments: 10
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
102 # mean delete size: 2.13281
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
103 # mean insert size: 2.53637
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
104 # matchProb: 0.982843
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
105 # delOpenProb: 0.00657043
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
106 # insOpenProb: 0.00984574
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
107 # delExtendProb: 0.531134
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
108 # insExtendProb: 0.605736
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
109
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
110 # substitution percent identity: 69.4001
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
111
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
112 # count matrix (query letters = columns, reference letters = rows):
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
113 # A C G T
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
114 # A 3071.2 586.39 432.58 390.03
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
115 # C 602.06 2979.4 154.2015 775.84
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
116 # G 260.13 83.439 1563.17 67.5164
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
117 # T 349.003 643.71 124.293 2522.3
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
118
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
119 # probability matrix (query letters = columns, reference letters = rows):
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
120 # A C G T
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
121 # A 0.21028 0.0401492 0.0296181 0.0267048
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
122 # C 0.0412221 0.203995 0.0105579 0.0531206
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
123 # G 0.0178107 0.00571294 0.107028 0.00462274
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
124 # T 0.0238957 0.0440738 0.00851015 0.172698
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
125
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
126 # delExistCost: 469
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
127 # insExistCost: 460
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
128 # delExtendCost: 57
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
129 # insExtendCost: 45
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
130
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
131 # score matrix (query letters = columns, reference letters = rows):
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
132 # A C G T
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
133 # A 76 -75 -45 -100
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
134 # C -73 72 -140 -38
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
135 # G -74 -178 147 -185
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
136 # T -103 -48 -140 89
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
137
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
138 # lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.4064 -p- /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/humdb /tmp/tmpc7ashbco
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
139
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
140 # aligned letter pairs: 14614.3
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
141 # deletes: 173.005
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
142 # inserts: 333.783
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
143 # delOpens: 71.881
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
144 # insOpens: 116.037
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
145 # alignments: 8
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
146 # mean delete size: 2.40683
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
147 # mean insert size: 2.87652
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
148 # matchProb: 0.986705
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
149 # delOpenProb: 0.00485315
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
150 # insOpenProb: 0.0078344
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
151 # delExtendProb: 0.584515
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
152 # insExtendProb: 0.652358
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
153
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
154 # substitution percent identity: 68.8464
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
155
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
156 # count matrix (query letters = columns, reference letters = rows):
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
157 # A C G T
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
158 # A 3054 603.416 435.41 400.71
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
159 # C 620.59 2961.2 159.53 789.72
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
160 # G 265.6 86.864 1557.13 68.4163
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
161 # T 354.125 649.76 125.994 2505.1
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
162
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
163 # probability matrix (query letters = columns, reference letters = rows):
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
164 # A C G T
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
165 # A 0.208641 0.0412238 0.0297461 0.0273755
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
166 # C 0.0423971 0.202301 0.0108987 0.0539516
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
167 # G 0.0181451 0.00593432 0.106379 0.00467402
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
168 # T 0.0241929 0.0443899 0.00860758 0.171142
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
169
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
170 # delExistCost: 516
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
171 # insExistCost: 500
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
172 # delExtendCost: 49
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
173 # insExtendCost: 38
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
174
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
175 # score matrix (query letters = columns, reference letters = rows):
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
176 # A C G T
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
177 # A 75 -72 -44 -98
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
178 # C -70 72 -136 -37
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
179 # G -72 -174 146 -184
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
180 # T -102 -46 -138 89
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
181
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
182 # lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.2552 -p- /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/humdb /tmp/tmpc7ashbco
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
183
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
184 # aligned letter pairs: 14846.5
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
185 # deletes: 168.42
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
186 # inserts: 340.671
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
187 # delOpens: 63.085
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
188 # insOpens: 107.237
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
189 # alignments: 7
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
190 # mean delete size: 2.66973
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
191 # mean insert size: 3.1768
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
192 # matchProb: 0.988132
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
193 # delOpenProb: 0.00419872
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
194 # insOpenProb: 0.00713732
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
195 # delExtendProb: 0.62543
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
196 # insExtendProb: 0.685218
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
197
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
198 # substitution percent identity: 68.3619
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
199
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
200 # count matrix (query letters = columns, reference letters = rows):
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
201 # A C G T
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
202 # A 3085.6 630.559 444.71 420.06
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
203 # C 641.49 2985.3 165.39 812.21
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
204 # G 270.72 92.7 1563.4 69.63
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
205 # T 360.446 667.21 130.014 2532.3
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
206
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
207 # probability matrix (query letters = columns, reference letters = rows):
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
208 # A C G T
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
209 # A 0.207481 0.0423998 0.029903 0.0282455
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
210 # C 0.0431348 0.200736 0.0111211 0.0546143
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
211 # G 0.0182037 0.0062333 0.105126 0.00468203
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
212 # T 0.024237 0.0448643 0.00874235 0.170276
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
213
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
214 # delExistCost: 546
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
215 # insExistCost: 521
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
216 # delExtendCost: 42
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
217 # insExtendCost: 34
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
218
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
219 # score matrix (query letters = columns, reference letters = rows):
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
220 # A C G T
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
221 # A 75 -70 -44 -95
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
222 # C -69 71 -134 -36
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
223 # G -71 -169 146 -183
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
224 # T -101 -45 -136 88
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
225
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
226 # lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.0533 -p- /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/humdb /tmp/tmpc7ashbco
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
227
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
228 # aligned letter pairs: 14896.8
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
229 # deletes: 179.049
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
230 # inserts: 347.285
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
231 # delOpens: 59.728
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
232 # insOpens: 103.021
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
233 # alignments: 5
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
234 # mean delete size: 2.99774
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
235 # mean insert size: 3.37101
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
236 # matchProb: 0.988799
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
237 # delOpenProb: 0.00396454
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
238 # insOpenProb: 0.00683818
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
239 # delExtendProb: 0.666415
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
240 # insExtendProb: 0.703353
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
241
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
242 # substitution percent identity: 68.1898
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
243
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
244 # count matrix (query letters = columns, reference letters = rows):
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
245 # A C G T
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
246 # A 3083.6 634.137 445.41 422.54
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
247 # C 648.98 2997.2 169.11 816.24
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
248 # G 273.63 93.839 1562.4 71.58
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
249 # T 365.254 674.05 132.042 2532.3
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
250
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
251 # probability matrix (query letters = columns, reference letters = rows):
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
252 # A C G T
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
253 # A 0.206644 0.0424959 0.0298486 0.028316
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
254 # C 0.0434906 0.200854 0.0113327 0.0546993
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
255 # G 0.018337 0.0062885 0.104702 0.00479684
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
256 # T 0.024477 0.0451706 0.00884863 0.169699
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
257
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
258 # delExistCost: 566
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
259 # insExistCost: 532
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
260 # delExtendCost: 37
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
261 # insExtendCost: 32
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
262
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
263 # score matrix (query letters = columns, reference letters = rows):
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
264 # A C G T
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
265 # A 75 -70 -43 -95
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
266 # C -68 71 -132 -36
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
267 # G -70 -168 146 -181
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
268 # T -100 -45 -135 88
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
269
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
270 # lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.3763 -p- /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/humdb /tmp/tmpc7ashbco
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
271
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
272 # aligned letter pairs: 14897.3
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
273 # deletes: 182.446
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
274 # inserts: 350.271
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
275 # delOpens: 57.786
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
276 # insOpens: 101.442
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
277 # alignments: 5
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
278 # mean delete size: 3.15727
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
279 # mean insert size: 3.45292
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
280 # matchProb: 0.989031
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
281 # delOpenProb: 0.00383641
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
282 # insOpenProb: 0.00673473
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
283 # delExtendProb: 0.683271
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
284 # insExtendProb: 0.71039
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
285
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
286 # substitution percent identity: 68.1657
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
287
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
288 # count matrix (query letters = columns, reference letters = rows):
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
289 # A C G T
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
290 # A 3083.6 635.136 445.71 423.86
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
291 # C 650.36 2996.2 169.48 816.19
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
292 # G 272.95 94.064 1561.4 71.9
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
293 # T 365.571 674.06 131.918 2532.4
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
294
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
295 # probability matrix (query letters = columns, reference letters = rows):
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
296 # A C G T
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
297 # A 0.206609 0.0425557 0.0298637 0.0283997
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
298 # C 0.0435758 0.200753 0.0113556 0.0546868
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
299 # G 0.0182884 0.00630253 0.104618 0.00481749
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
300 # T 0.0244942 0.0451638 0.00883885 0.169677
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
301
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
302 # delExistCost: 577
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
303 # insExistCost: 537
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
304 # delExtendCost: 34
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
305 # insExtendCost: 31
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
306
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
307 # score matrix (query letters = columns, reference letters = rows):
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
308 # A C G T
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
309 # A 75 -70 -43 -94
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
310 # C -68 71 -132 -36
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
311 # G -71 -168 146 -180
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
312 # T -100 -45 -135 88
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
313
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
314 # lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.3676 -p- /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/humdb /tmp/tmpc7ashbco
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
315
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
316 # aligned letter pairs: 14897.3
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
317 # deletes: 186.95
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
318 # inserts: 354.262
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
319 # delOpens: 56.767
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
320 # insOpens: 100.893
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
321 # alignments: 5
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
322 # mean delete size: 3.29329
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
323 # mean insert size: 3.51126
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
324 # matchProb: 0.989133
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
325 # delOpenProb: 0.00376915
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
326 # insOpenProb: 0.00669898
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
327 # delExtendProb: 0.696352
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
328 # insExtendProb: 0.715202
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
329
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
330 # substitution percent identity: 68.1477
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
331
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
332 # count matrix (query letters = columns, reference letters = rows):
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
333 # A C G T
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
334 # A 3081.6 633.831 445.71 424.07
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
335 # C 650.26 2986.2 169.38 816.08
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
336 # G 272.84 94.051 1561.4 71.9
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
337 # T 365.569 674.17 131.691 2532.4
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
338
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
339 # probability matrix (query letters = columns, reference letters = rows):
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
340 # A C G T
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
341 # A 0.206664 0.0425072 0.0298911 0.0284398
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
342 # C 0.043609 0.200266 0.0113593 0.0547295
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
343 # G 0.0182977 0.00630743 0.104714 0.00482189
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
344 # T 0.0245165 0.0452125 0.00883171 0.169833
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
345
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
346 # delExistCost: 583
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
347 # insExistCost: 540
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
348 # delExtendCost: 33
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
349 # insExtendCost: 30
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
350
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
351 # score matrix (query letters = columns, reference letters = rows):
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
352 # A C G T
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
353 # A 75 -70 -43 -94
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
354 # C -68 71 -132 -35
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
355 # G -71 -168 146 -180
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
356 # T -100 -45 -135 88
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
357
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
358 # lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.511 -p- /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/humdb /tmp/tmpc7ashbco
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
359
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
360 # aligned letter pairs: 14897.4
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
361 # deletes: 188.952
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
362 # inserts: 357.073
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
363 # delOpens: 56.483
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
364 # insOpens: 100.742
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
365 # alignments: 5
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
366 # mean delete size: 3.34529
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
367 # mean insert size: 3.54443
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
368 # matchProb: 0.989162
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
369 # delOpenProb: 0.00375038
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
370 # insOpenProb: 0.0066891
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
371 # delExtendProb: 0.701072
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
372 # insExtendProb: 0.717867
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
373
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
374 # substitution percent identity: 68.1444
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
375
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
376 # count matrix (query letters = columns, reference letters = rows):
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
377 # A C G T
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
378 # A 3081.6 633.732 445.81 423.98
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
379 # C 650.18 2986.2 169.39 816.1
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
380 # G 273.05 94.134 1561.4 71.9
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
381 # T 365.574 674.17 131.782 2531.4
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
382
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
383 # probability matrix (query letters = columns, reference letters = rows):
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
384 # A C G T
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
385 # A 0.206675 0.0425027 0.0298993 0.0284352
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
386 # C 0.0436058 0.200276 0.0113605 0.0547336
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
387 # G 0.0183127 0.00631331 0.104719 0.00482214
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
388 # T 0.0245181 0.0452147 0.00883826 0.169774
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
389
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
390 # delExistCost: 586
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
391 # insExistCost: 541
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
392 # delExtendCost: 32
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
393 # insExtendCost: 30
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
394
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
395 # score matrix (query letters = columns, reference letters = rows):
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
396 # A C G T
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
397 # A 75 -70 -43 -94
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
398 # C -68 71 -132 -35
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
399 # G -71 -168 146 -180
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
400 # T -100 -45 -135 88
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
401
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
402 # lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.494 -p- /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/humdb /tmp/tmpc7ashbco
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
403
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
404 # aligned letter pairs: 14897.4
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
405 # deletes: 190.558
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
406 # inserts: 358.367
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
407 # delOpens: 56.231
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
408 # insOpens: 100.769
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
409 # alignments: 5
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
410 # mean delete size: 3.38884
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
411 # mean insert size: 3.55632
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
412 # matchProb: 0.989177
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
413 # delOpenProb: 0.0037337
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
414 # insOpenProb: 0.00669099
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
415 # delExtendProb: 0.704914
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
416 # insExtendProb: 0.718811
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
417
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
418 # substitution percent identity: 68.1458
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
419
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
420 # count matrix (query letters = columns, reference letters = rows):
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
421 # A C G T
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
422 # A 3081.6 633.732 445.81 423.98
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
423 # C 650.08 2986.2 169.39 816.1
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
424 # G 273.05 94.125 1561.4 71.9
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
425 # T 365.574 674.07 131.672 2531.4
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
426
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
427 # probability matrix (query letters = columns, reference letters = rows):
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
428 # A C G T
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
429 # A 0.206679 0.0425036 0.0298999 0.0284358
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
430 # C 0.0436 0.200281 0.0113608 0.0547348
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
431 # G 0.0183131 0.00631284 0.104721 0.00482224
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
432 # T 0.0245186 0.045209 0.00883107 0.169778
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
433
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
434 # delExistCost: 588
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
435 # insExistCost: 541
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
436 # delExtendCost: 32
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
437 # insExtendCost: 30
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
438
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
439 # score matrix (query letters = columns, reference letters = rows):
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
440 # A C G T
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
441 # A 75 -70 -43 -94
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
442 # C -68 71 -132 -35
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
443 # G -71 -168 146 -180
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
444 # T -100 -45 -135 88
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
445
7
657fb614ee81 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 6
diff changeset
446 # lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.4704 -p- /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/humdb /tmp/tmpc7ashbco
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
447
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
448 # aligned letter pairs: 14897.4
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
449 # deletes: 188.951
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
450 # inserts: 356.964
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
451 # delOpens: 55.8286
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
452 # insOpens: 100.647
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
453 # alignments: 5
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
454 # mean delete size: 3.38448
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
455 # mean insert size: 3.54669
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
456 # matchProb: 0.989211
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
457 # delOpenProb: 0.00370711
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
458 # insOpenProb: 0.00668312
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
459 # delExtendProb: 0.704534
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
460 # insExtendProb: 0.718047
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
461
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
462 # substitution percent identity: 68.1409
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
463
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
464 # count matrix (query letters = columns, reference letters = rows):
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
465 # A C G T
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
466 # A 3081.6 633.731 445.81 424.08
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
467 # C 650.28 2986.2 169.49 816.1
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
468 # G 273.05 94.136 1561.4 71.9
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
469 # T 365.673 674.17 131.672 2530.4
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
470
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
471 # probability matrix (query letters = columns, reference letters = rows):
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
472 # A C G T
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
473 # A 0.206684 0.0425046 0.0299007 0.0284432
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
474 # C 0.0436146 0.200286 0.0113678 0.0547362
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
475 # G 0.0183136 0.00631375 0.104724 0.00482237
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
476 # T 0.0245259 0.0452169 0.0088313 0.169715
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
477
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
478 # delExistCost: 588
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
479 # insExistCost: 541
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
480 # delExtendCost: 32
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
481 # insExtendCost: 30
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
482
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
483 # score matrix (query letters = columns, reference letters = rows):
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
484 # A C G T
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
485 # A 75 -70 -43 -94
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
486 # C -68 71 -132 -35
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
487 # G -71 -168 146 -180
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
488 # T -100 -45 -135 88
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
489
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
490 #last -X 0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
491 #last -Q 0
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
492 #last -t4.72795
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
493 #last -a 29
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
494 #last -A 28
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
495 #last -b 2
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
496 #last -B 1
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
497 #last -s 1
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
498 #last -S 1
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
499 # score matrix (query letters = columns, reference letters = rows):
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
500 A C G T
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
501 A 4 -3 -2 -5
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
502 C -3 4 -7 -2
6
713be4796767 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
503 G -4 -8 7 -9
0
7f7e48d3b85d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit eee0dd5282b34bcfbfd79381be8474e8fcf2dbb8"
iuc
parents:
diff changeset
504 T -5 -2 -7 4