Mercurial > repos > iuc > krakentools_beta_diversity
comparison test-data/3.tabular @ 0:56bf015afbd1 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/krakentools commit 3dfd5d7d5870695d24d2ede7b321bcaac25e0209
| author | iuc |
|---|---|
| date | Fri, 13 Jan 2023 13:20:58 +0000 |
| parents | |
| children |
comparison
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| -1:000000000000 | 0:56bf015afbd1 |
|---|---|
| 1 name taxonomy_id taxonomy_lvl kraken_assigned_reads added_reads new_est_reads fraction_total_reads | |
| 2 Enterococcus faecium 1352 S 19117311 5606915 24724226 0.91976 | |
| 3 Enterococcus avium 33945 S 185099 8604 193703 0.00721 | |
| 4 Enterococcus faecalis 1351 S 23719 2158 25877 0.00096 | |
| 5 Enterococcus durans 53345 S 21563 1616 23179 0.00086 | |
| 6 Enterococcus hirae 1354 S 18570 853 19423 0.00072 | |
| 7 Enterococcus lactis 357441 S 14452 35311 49763 0.00185 | |
| 8 Enterococcus mundtii 53346 S 13586 228 13814 0.00051 | |
| 9 Enterococcus casseliflavus 37734 S 11263 3466 14729 0.00055 | |
| 10 Enterococcus sp. FDAARGOS_375 2060307 S 5363 6531 11894 0.00044 | |
| 11 Enterococcus sp. DA9 2603296 S 3725 15804 19529 0.00073 | |
| 12 Enterococcus sp. FDAARGOS_553 2420313 S 339 1348 1687 0.00006 | |
| 13 Enterococcus sp. M190262 2582830 S 162 175 337 0.00001 | |
| 14 Enterococcus sp. CR-Ec1 2057791 S 58 52 110 0.00000 | |
| 15 Enterococcus thailandicus 417368 S 5457 126 5583 0.00021 | |
| 16 Enterococcus cecorum 44008 S 2805 68 2873 0.00011 | |
| 17 Enterococcus saigonensis 1805431 S 2378 312 2690 0.00010 | |
| 18 Enterococcus rotai 118060 S 1300 3 1303 0.00005 | |
| 19 Enterococcus raffinosus 71452 S 1102 0 1102 0.00004 | |
| 20 Enterococcus gilvus 160453 S 246 8 254 0.00001 | |
| 21 Enterococcus gallinarum 1353 S 190 300 490 0.00002 | |
| 22 Enterococcus wangshanyuanii 2005703 S 147 0 147 0.00001 | |
| 23 Enterococcus innesii 2839759 S 72 0 72 0.00000 | |
| 24 Vagococcus carniphilus 218144 S 693 52 745 0.00003 | |
| 25 Vagococcus fluvialis 2738 S 281 0 281 0.00001 | |
| 26 Vagococcus penaei 633807 S 62 1 63 0.00000 | |
| 27 Vagococcus teuberi 519472 S 52 1 53 0.00000 | |
| 28 Vagococcus lutrae 81947 S 33 0 33 0.00000 | |
| 29 Vagococcus xieshaowenii 2562451 S 25 3 28 0.00000 | |
| 30 Vagococcus zengguangii 2571750 S 24 2 26 0.00000 | |
| 31 Vagococcus coleopterorum 2714946 S 12 0 12 0.00000 | |
| 32 Tetragenococcus koreensis 290335 S 423 44 467 0.00002 | |
| 33 Tetragenococcus halophilus 51669 S 82 10 92 0.00000 | |
| 34 Tetragenococcus osmophilus 526944 S 52 14 66 0.00000 | |
| 35 Melissococcus plutonius 33970 S 13 0 13 0.00000 | |
| 36 Streptococcus thermophilus 1308 S 91845 3570 95415 0.00355 | |
| 37 Streptococcus pyogenes 1314 S 2298 203 2501 0.00009 | |
| 38 Streptococcus suis 1307 S 1790 39 1829 0.00007 | |
| 39 Streptococcus agalactiae 1311 S 1315 1759 3074 0.00011 | |
| 40 Streptococcus cristatus 45634 S 772 702 1474 0.00005 | |
| 41 Streptococcus parauberis 1348 S 174 7 181 0.00001 | |
| 42 Streptococcus pneumoniae 1313 S 156 159 315 0.00001 | |
| 43 Streptococcus salivarius 1304 S 96 7 103 0.00000 | |
| 44 Streptococcus infantis 68892 S 93 113 206 0.00001 | |
| 45 Streptococcus sp. HSISS2 1316411 S 16 1 17 0.00000 | |
| 46 Streptococcus sp. DAT741 1940319 S 16 2 18 0.00000 | |
| 47 Streptococcus sp. HSISS3 1316412 S 11 1 12 0.00000 | |
| 48 Streptococcus dysgalactiae 1334 S 47 17 64 0.00000 | |
| 49 Streptococcus equi 1336 S 12 0 12 0.00000 | |
| 50 Streptococcus gallolyticus 315405 S 54 7 61 0.00000 | |
| 51 Streptococcus anginosus 1328 S 25 4 29 0.00000 | |
| 52 Streptococcus constellatus 76860 S 16 103 119 0.00000 | |
| 53 Streptococcus mitis 28037 S 42 1 43 0.00000 | |
| 54 Streptococcus lutetiensis 150055 S 39 18 57 0.00000 | |
| 55 Streptococcus pluranimalium 82348 S 30 0 30 0.00000 | |
| 56 Streptococcus gordonii 1302 S 24 0 24 0.00000 | |
| 57 Streptococcus vestibularis 1343 S 22 0 22 0.00000 | |
| 58 Streptococcus pasteurianus 197614 S 20 18 38 0.00000 | |
| 59 Streptococcus iniae 1346 S 20 0 20 0.00000 | |
| 60 Streptococcus oralis 1303 S 17 0 17 0.00000 | |
| 61 Streptococcus parasuis 1501662 S 16 0 16 0.00000 | |
| 62 Streptococcus mutans 1309 S 11 0 11 0.00000 | |
| 63 Streptococcus equinus 1335 S 10 0 10 0.00000 | |
| 64 Lactococcus lactis 1358 S 554 571 1125 0.00004 | |
| 65 Lactococcus raffinolactis 1366 S 255 9 264 0.00001 | |
| 66 Lactococcus cremoris 1359 S 253 85 338 0.00001 | |
| 67 Lactococcus garvieae 1363 S 223 40 263 0.00001 | |
| 68 Lactococcus piscium 1364 S 22 18 40 0.00000 | |
| 69 Lactococcus taiwanensis 1151742 S 16 0 16 0.00000 | |
| 70 Lactococcus sp. LG606 2816912 S 10 9 19 0.00000 | |
| 71 Jeotgalibaca sp. PTS2502 1903686 S 3404 392 3796 0.00014 | |
| 72 Jeotgalibaca arthritidis 1868794 S 59 7 66 0.00000 | |
| 73 Jeotgalibaca ciconiae 2496265 S 27 0 27 0.00000 | |
| 74 Jeotgalibaca porci 1868793 S 25 1 26 0.00000 | |
| 75 Granulicatella adiacens 46124 S 1042 0 1042 0.00004 | |
| 76 Granulicatella elegans 137732 S 46 0 46 0.00000 | |
| 77 Carnobacterium viridans 174587 S 93 0 93 0.00000 | |
| 78 Carnobacterium maltaromaticum 2751 S 63 14 77 0.00000 | |
| 79 Carnobacterium divergens 2748 S 56 5 61 0.00000 | |
| 80 Carnobacterium inhibens 147709 S 24 6 30 0.00000 | |
| 81 Marinilactibacillus sp. 15R 1911586 S 50 1 51 0.00000 | |
| 82 Dolosigranulum pigrum 29394 S 17 0 17 0.00000 | |
| 83 Limosilactobacillus vaginalis 1633 S 831 20 851 0.00003 | |
| 84 Limosilactobacillus reuteri 1598 S 704 22 726 0.00003 | |
| 85 Limosilactobacillus fermentum 1613 S 73 10 83 0.00000 | |
| 86 Leuconostoc gelidum 1244 S 866 0 866 0.00003 | |
| 87 Leuconostoc citreum 33964 S 37 23 60 0.00000 | |
| 88 Leuconostoc lactis 1246 S 25 3 28 0.00000 | |
| 89 Lactobacillus sp. wkB8 1545702 S 302 8 310 0.00001 | |
| 90 Lactobacillus delbrueckii 1584 S 276 4 280 0.00001 | |
| 91 Lactobacillus acidophilus 1579 S 43 19 62 0.00000 | |
| 92 Lactobacillus jensenii 109790 S 18 1 19 0.00000 | |
| 93 Lactobacillus iners 147802 S 17 0 17 0.00000 | |
| 94 Lactobacillus johnsonii 33959 S 16 0 16 0.00000 | |
| 95 Lactobacillus amylovorus 1604 S 14 0 14 0.00000 | |
| 96 Lactobacillus acetotolerans 1600 S 12 0 12 0.00000 | |
| 97 Lactobacillus helveticus 1587 S 10 0 10 0.00000 | |
| 98 Weissella cibaria 137591 S 121 10 131 0.00000 | |
| 99 Weissella jogaejeotgali 1631871 S 84 10 94 0.00000 | |
| 100 Weissella hellenica 46256 S 18 1 19 0.00000 | |
| 101 Weissella confusa 1583 S 15 1 16 0.00000 | |
| 102 Ligilactobacillus salivarius 1624 S 153 4 157 0.00001 | |
| 103 Ligilactobacillus murinus 1622 S 64 4 68 0.00000 | |
| 104 Ligilactobacillus ruminis 1623 S 15 0 15 0.00000 | |
| 105 Ligilactobacillus agilis 1601 S 14 0 14 0.00000 | |
| 106 Lactiplantibacillus plantarum 1590 S 137 200 337 0.00001 | |
| 107 Lactiplantibacillus paraplantarum 60520 S 11 0 11 0.00000 | |
| 108 Pediococcus acidilactici 1254 S 68 2 70 0.00000 | |
| 109 Pediococcus pentosaceus 1255 S 24 1 25 0.00000 | |
| 110 Pediococcus damnosus 51663 S 11 1 12 0.00000 | |
| 111 Latilactobacillus curvatus 28038 S 51 2 53 0.00000 | |
| 112 Latilactobacillus sakei 1599 S 47 3 50 0.00000 | |
| 113 Lacticaseibacillus paracasei 1597 S 34 17 51 0.00000 | |
| 114 Levilactobacillus brevis 1580 S 35 3 38 0.00000 | |
| 115 Periweissella cryptocerci 2506420 S 29 0 29 0.00000 | |
| 116 Fructilactobacillus sanfranciscensis 1625 S 15 0 15 0.00000 | |
| 117 Loigolactobacillus coryniformis 1610 S 10 2 12 0.00000 | |
| 118 Acetilactobacillus jinshanensis 1720083 S 12 0 12 0.00000 | |
| 119 Ignavigranum ruoffiae 89093 S 1065 0 1065 0.00004 | |
| 120 Aerococcus urinaeequi 51665 S 137 19 156 0.00001 | |
| 121 Aerococcus viridans 1377 S 89 22 111 0.00000 | |
| 122 Suicoccus acidiformans 2036206 S 10 0 10 0.00000 | |
| 123 Staphylococcus aureus 1280 S 12774 12776 25550 0.00095 | |
| 124 Staphylococcus pseudintermedius 283734 S 1516 42 1558 0.00006 | |
| 125 Staphylococcus warneri 1292 S 176 16 192 0.00001 | |
| 126 Staphylococcus haemolyticus 1283 S 102 3 105 0.00000 | |
| 127 Staphylococcus epidermidis 1282 S 51 1 52 0.00000 | |
| 128 Staphylococcus argenteus 985002 S 13 5 18 0.00000 | |
| 129 Staphylococcus hominis 1290 S 13 0 13 0.00000 | |
| 130 Staphylococcus xylosus 1288 S 11 0 11 0.00000 | |
| 131 Nosocomiicoccus ampullae 489910 S 143 0 143 0.00001 | |
| 132 Mammaliicoccus sciuri 1296 S 65 3 68 0.00000 | |
| 133 Mammaliicoccus vitulinus 71237 S 11 0 11 0.00000 | |
| 134 Abyssicoccus albus 1817405 S 33 0 33 0.00000 | |
| 135 Bacillus subtilis 1423 S 5091 4934 10025 0.00037 | |
| 136 Bacillus velezensis 492670 S 210 43 253 0.00001 | |
| 137 Bacillus amyloliquefaciens 1390 S 63 90 153 0.00001 | |
| 138 Bacillus licheniformis 1402 S 62 8 70 0.00000 | |
| 139 Bacillus sp. NSP9.1 1071078 S 1635 4 1639 0.00006 | |
| 140 Bacillus sp. LJBS17 2859227 S 39 0 39 0.00000 | |
| 141 Bacillus sp. ZY-1-1 2093834 S 12 6 18 0.00000 | |
| 142 Bacillus sp. COPE52 2233998 S 12 4 16 0.00000 | |
| 143 Bacillus sp. OxB-1 98228 S 11 0 11 0.00000 | |
| 144 Bacillus sp. 7D3 2851015 S 10 0 10 0.00000 | |
| 145 Bacillus thuringiensis 1428 S 255 177 432 0.00002 | |
| 146 Bacillus cereus 1396 S 235 464 699 0.00003 | |
| 147 Bacillus anthracis 1392 S 166 254 420 0.00002 | |
| 148 Bacillus mycoides 1405 S 86 1 87 0.00000 | |
| 149 Bacillus wiedmannii 1890302 S 65 0 65 0.00000 | |
| 150 Bacillus cytotoxicus 580165 S 13 0 13 0.00000 | |
| 151 Bacillus pseudomycoides 64104 S 12 0 12 0.00000 | |
| 152 Bacillus altitudinis 293387 S 32 1 33 0.00000 | |
| 153 Bacillus aquiflavi 2672567 S 21 0 21 0.00000 | |
| 154 Bacillus safensis 561879 S 11 0 11 0.00000 | |
| 155 Bacillus methanolicus 1471 S 10 0 10 0.00000 | |
| 156 Anoxybacillus sediminis 2613334 S 5062 0 5062 0.00019 | |
| 157 Lysinibacillus sphaericus 1421 S 59 20 79 0.00000 | |
| 158 Lysinibacillus timonensis 2086577 S 31 0 31 0.00000 | |
| 159 Lysinibacillus sp. SGAir0095 2070463 S 14 0 14 0.00000 | |
| 160 Lysinibacillus agricola 2590012 S 11 0 11 0.00000 | |
| 161 Metabacillus sp. B2-18 2897333 S 85 0 85 0.00000 | |
| 162 Metabacillus endolithicus 1535204 S 24 0 24 0.00000 | |
| 163 Metabacillus litoralis 152268 S 11 3 14 0.00000 | |
| 164 Priestia megaterium 1404 S 28 14 42 0.00000 | |
| 165 Priestia flexa 86664 S 19 0 19 0.00000 | |
| 166 Virgibacillus sp. 6R 1911587 S 21 6 27 0.00000 | |
| 167 Virgibacillus sp. Bac330 2419841 S 11 0 11 0.00000 | |
| 168 Cytobacillus oceanisediminis 665099 S 38 0 38 0.00000 | |
| 169 Weizmannia coagulans 1398 S 28 4 32 0.00000 | |
| 170 Niallia circulans 1397 S 22 0 22 0.00000 | |
| 171 Gracilibacillus sp. SSPM10-3 2932255 S 15 0 15 0.00000 | |
| 172 Heyndrickxia oleronia 38875 S 12 0 12 0.00000 | |
| 173 Halalkalibacterium halodurans 86665 S 14 3 17 0.00000 | |
| 174 Neobacillus mesonae 1193713 S 10 0 10 0.00000 | |
| 175 Anaerobacillus isosaccharinicus 1532552 S 11 0 11 0.00000 | |
| 176 Listeria monocytogenes 1639 S 3960 262 4222 0.00016 | |
| 177 Listeria innocua 1642 S 61 12 73 0.00000 | |
| 178 Listeria grayi 1641 S 28 0 28 0.00000 | |
| 179 Listeria ivanovii 1638 S 11 0 11 0.00000 | |
| 180 Brochothrix thermosphacta 2756 S 1155 17 1172 0.00004 | |
| 181 Brevibacillus laterosporus 1465 S 287 67 354 0.00001 | |
| 182 Paenibacillus physcomitrellae 1619311 S 31 19 50 0.00000 | |
| 183 Paenibacillus larvae 1464 S 24 81 105 0.00000 | |
| 184 Paenibacillus bovis 1616788 S 22 2 24 0.00000 | |
| 185 Paenibacillus sonchi 373687 S 20 17 37 0.00000 | |
| 186 Paenibacillus jilunlii 682956 S 17 21 38 0.00000 | |
| 187 Paenibacillus uliginis 683737 S 11 1 12 0.00000 | |
| 188 Sporosarcina sp. PTS2304 2283194 S 64 5 69 0.00000 | |
| 189 Solibacillus silvestris 76853 S 38 2 40 0.00000 | |
| 190 Solibacillus sp. R5-41 2048654 S 17 0 17 0.00000 | |
| 191 Planococcus sp. 107-1 2908840 S 14 0 14 0.00000 | |
| 192 Planococcus antarcticus 161360 S 11 7 18 0.00000 | |
| 193 Exiguobacterium sp. S3-2 1389960 S 20 24 44 0.00000 | |
| 194 Thermoactinomyces vulgaris 2026 S 41 0 41 0.00000 | |
| 195 [Ruminococcus] gnavus 33038 S 351 64 415 0.00002 | |
| 196 [Ruminococcus] torques 33039 S 22 5 27 0.00000 | |
| 197 Blautia obeum 40520 S 86 13 99 0.00000 | |
| 198 Blautia sp. SC05B48 2479767 S 42 5 47 0.00000 | |
| 199 Blautia sp. NBRC 113351 2877527 S 19 0 19 0.00000 | |
| 200 Blautia producta 33035 S 55 1 56 0.00000 | |
| 201 Blautia massiliensis 1737424 S 40 0 40 0.00000 | |
| 202 Blautia argi 1912897 S 31 1 32 0.00000 | |
| 203 Blautia hansenii 1322 S 24 8 32 0.00000 | |
| 204 Blautia pseudococcoides 1796616 S 20 554 574 0.00002 | |
| 205 Anaerostipes hadrus 649756 S 333 27 360 0.00001 | |
| 206 Anaerobutyricum hallii 39488 S 149 40 189 0.00001 | |
| 207 Coprococcus comes 410072 S 102 20 122 0.00000 | |
| 208 Coprococcus catus 116085 S 27 3 30 0.00000 | |
| 209 Enterocloster bolteae 208479 S 88 8 96 0.00000 | |
| 210 Enterocloster clostridioformis 1531 S 25 55 80 0.00000 | |
| 211 Sellimonas intestinalis 1653434 S 83 0 83 0.00000 | |
| 212 [Clostridium] scindens 29347 S 56 3 59 0.00000 | |
| 213 Faecalicatena sp. Marseille-Q4148 2823316 S 50 0 50 0.00000 | |
| 214 Roseburia intestinalis 166486 S 21 6 27 0.00000 | |
| 215 Roseburia hominis 301301 S 14 3 17 0.00000 | |
| 216 Dorea longicatena 88431 S 31 0 31 0.00000 | |
| 217 Anaerocolumna cellulosilytica 433286 S 12 0 12 0.00000 | |
| 218 Lachnospira eligens 39485 S 14 0 14 0.00000 | |
| 219 Ruthenibacterium lactatiformans 1550024 S 1403 14 1417 0.00005 | |
| 220 Pseudoclostridium thermosuccinogenes 84032 S 34 0 34 0.00000 | |
| 221 Caproiciproducens sp. NJN-50 2507162 S 33 0 33 0.00000 | |
| 222 Faecalibacterium prausnitzii 853 S 25 0 25 0.00000 | |
| 223 Solibaculum mannosilyticum 2780922 S 20 0 20 0.00000 | |
| 224 Flavonifractor plautii 292800 S 20 0 20 0.00000 | |
| 225 Clostridioides difficile 1496 S 1266 173 1439 0.00005 | |
| 226 Clostridium perfringens 1502 S 77 1 78 0.00000 | |
| 227 Clostridium tetani 1513 S 35 0 35 0.00000 | |
| 228 Clostridium botulinum 1491 S 12 15 27 0.00000 | |
| 229 Clostridium intestinale 36845 S 12 0 12 0.00000 | |
| 230 Clostridium tyrobutyricum 1519 S 11 0 11 0.00000 | |
| 231 Clostridium beijerinckii 1520 S 11 2 13 0.00000 | |
| 232 Eubacterium sp. NSJ-61 2764325 S 56 2 58 0.00000 | |
| 233 Mogibacterium pumilum 86332 S 25 2 27 0.00000 | |
| 234 Christensenella minuta 626937 S 20 0 20 0.00000 | |
| 235 Veillonella parvula 29466 S 857 2 859 0.00003 | |
| 236 Phascolarctobacterium faecium 33025 S 21 1 22 0.00000 | |
| 237 Parvimonas micra 33033 S 625 22 647 0.00002 | |
| 238 Amedibacterium intestinale 2583452 S 145 6 151 0.00001 | |
| 239 [Clostridium] innocuum 1522 S 73 1 74 0.00000 | |
| 240 Erysipelatoclostridium ramosum 1547 S 68 0 68 0.00000 | |
| 241 Faecalibacillus intestinalis 1982626 S 98 17 115 0.00000 | |
| 242 Erysipelothrix larvae 1514105 S 17 0 17 0.00000 | |
| 243 Erysipelothrix rhusiopathiae 1648 S 14 0 14 0.00000 | |
| 244 Longicatena caecimuris 1796635 S 25 0 25 0.00000 | |
| 245 Turicibacter sp. TJ11 2806443 S 10 0 10 0.00000 | |
| 246 Actinomyces sp. oral taxon 414 712122 S 136 13 149 0.00001 | |
| 247 Arcanobacterium haemolyticum 28264 S 21 2 23 0.00000 | |
| 248 Schaalia odontolytica 1660 S 10 0 10 0.00000 | |
| 249 Mycobacterium tuberculosis 1773 S 17 8 25 0.00000 | |
| 250 Bifidobacterium longum 216816 S 53 3 56 0.00000 | |
| 251 Cutibacterium acnes 1747 S 14 1 15 0.00000 | |
| 252 Eggerthella lenta 84112 S 135 12 147 0.00001 | |
| 253 Mycoplasma mycoides 2102 S 250 2 252 0.00001 | |
| 254 Mycoplasma capricolum 2095 S 24 6 30 0.00000 | |
| 255 Mycoplasmopsis bovirhinis 29553 S 32 0 32 0.00000 | |
| 256 Mycoplasmopsis gallinacea 29556 S 19 0 19 0.00000 | |
| 257 Klebsiella pneumoniae 573 S 460831 1030977 1491808 0.05550 | |
| 258 Klebsiella quasipneumoniae 1463165 S 4116 19763 23879 0.00089 | |
| 259 Klebsiella variicola 244366 S 4115 7438 11553 0.00043 | |
| 260 Klebsiella quasivariicola 2026240 S 1304 483 1787 0.00007 | |
| 261 Klebsiella africana 2489010 S 959 238 1197 0.00004 | |
| 262 Klebsiella sp. WP4-W18-ESBL-05 2675713 S 547 1351 1898 0.00007 | |
| 263 Klebsiella sp. PL-2018 2851540 S 46 0 46 0.00000 | |
| 264 Klebsiella sp. CTHL.F3a 2873296 S 45 0 45 0.00000 | |
| 265 Klebsiella sp. A52 2834819 S 43 0 43 0.00000 | |
| 266 Klebsiella sp. KPN54798 2897413 S 30 0 30 0.00000 | |
| 267 Klebsiella sp. P1CD1 2267618 S 21 129 150 0.00001 | |
| 268 Klebsiella aerogenes 548 S 815 92 907 0.00003 | |
| 269 Klebsiella michiganensis 1134687 S 547 11082 11629 0.00043 | |
| 270 Klebsiella oxytoca 571 S 519 180 699 0.00003 | |
| 271 Klebsiella grimontii 2058152 S 241 1042 1283 0.00005 | |
| 272 Klebsiella huaxiensis 2153354 S 124 13 137 0.00001 | |
| 273 Raoultella ornithinolytica 54291 S 316 170 486 0.00002 | |
| 274 Raoultella planticola 575 S 56 5 61 0.00000 | |
| 275 Raoultella sp. XY-1 2799495 S 10 38 48 0.00000 | |
| 276 Escherichia coli 562 S 2179 23338 25517 0.00095 | |
| 277 Escherichia fergusonii 564 S 17 4 21 0.00000 | |
| 278 Escherichia marmotae 1499973 S 17 1 18 0.00000 | |
| 279 Escherichia albertii 208962 S 13 1 14 0.00000 | |
| 280 Enterobacter cloacae complex sp. ECL411 2912629 S 232 0 232 0.00001 | |
| 281 Enterobacter cloacae complex sp. 2027919 S 51 23 74 0.00000 | |
| 282 Enterobacter hormaechei 158836 S 267 223 490 0.00002 | |
| 283 Enterobacter cloacae 550 S 224 59 283 0.00001 | |
| 284 Enterobacter roggenkampii 1812935 S 201 75 276 0.00001 | |
| 285 Enterobacter asburiae 61645 S 38 12 50 0.00000 | |
| 286 Enterobacter kobei 208224 S 25 14 39 0.00000 | |
| 287 Enterobacter ludwigii 299767 S 11 2 13 0.00000 | |
| 288 Enterobacter cancerogenus 69218 S 10 0 10 0.00000 | |
| 289 Enterobacter sp. JBIWA005 2831891 S 609 0 609 0.00002 | |
| 290 Enterobacter sp. DNB-S2 2720029 S 14 0 14 0.00000 | |
| 291 Enterobacter mori 539813 S 277 81 358 0.00001 | |
| 292 Salmonella enterica 28901 S 368 1315 1683 0.00006 | |
| 293 Salmonella sp. 599 S 43 1737 1780 0.00007 | |
| 294 Citrobacter freundii 546 S 137 88 225 0.00001 | |
| 295 Citrobacter portucalensis 1639133 S 33 40 73 0.00000 | |
| 296 Citrobacter arsenatis 2546350 S 66 9 75 0.00000 | |
| 297 Citrobacter amalonaticus 35703 S 14 10 24 0.00000 | |
| 298 Leclercia adecarboxylata 83655 S 176 35 211 0.00001 | |
| 299 Leclercia sp. J807 2681307 S 62 2 64 0.00000 | |
| 300 Shigella boydii 621 S 84 252 336 0.00001 | |
| 301 Shigella flexneri 623 S 64 214 278 0.00001 | |
| 302 Shigella dysenteriae 622 S 12 136 148 0.00001 | |
| 303 Cronobacter sakazakii 28141 S 35 47 82 0.00000 | |
| 304 Cronobacter universalis 535744 S 13 0 13 0.00000 | |
| 305 Kosakonia radicincitans 283686 S 16 19 35 0.00000 | |
| 306 Yokenella regensburgei 158877 S 38 1 39 0.00000 | |
| 307 Jejubacter calystegiae 2579935 S 29 0 29 0.00000 | |
| 308 Pluralibacter gergoviae 61647 S 10 0 10 0.00000 | |
| 309 Lelliottia amnigena 61646 S 14 0 14 0.00000 | |
| 310 Pectobacterium aquaticum 2204145 S 1547 0 1547 0.00006 | |
| 311 Serratia fonticola 47917 S 723 13 736 0.00003 | |
| 312 Serratia marcescens 615 S 42 6 48 0.00000 | |
| 313 Serratia symbiotica 138074 S 11 0 11 0.00000 | |
| 314 Yersinia ruckeri 29486 S 246 3 249 0.00001 | |
| 315 Pantoea stewartii 66269 S 333 15 348 0.00001 | |
| 316 Pantoea agglomerans 549 S 14 0 14 0.00000 | |
| 317 Pantoea dispersa 59814 S 11 0 11 0.00000 | |
| 318 Proteus mirabilis 584 S 19 2 21 0.00000 | |
| 319 Arsenophonus endosymbiont of Aphis craccivora 1231049 S 14 0 14 0.00000 | |
| 320 Morganella morganii 582 S 11 8 19 0.00000 | |
| 321 Edwardsiella tarda 636 S 10 5 15 0.00000 | |
| 322 Vibrio cholerae 666 S 13 1 14 0.00000 | |
| 323 Photobacterium damselae 38293 S 11 1 12 0.00000 | |
| 324 Gallibacterium anatis 750 S 12 0 12 0.00000 | |
| 325 Acinetobacter baumannii 470 S 17 6 23 0.00000 | |
| 326 Campylobacter coli 195 S 398 5 403 0.00001 | |
| 327 Campylobacter jejuni 197 S 58 5 63 0.00000 | |
| 328 Campylobacter sp. RM10537 1032242 S 10 0 10 0.00000 | |
| 329 Helicobacter pylori 210 S 12 0 12 0.00000 | |
| 330 Neisseria meningitidis 487 S 12 3 15 0.00000 | |
| 331 Prevotella nigrescens 28133 S 48 0 48 0.00000 | |
| 332 Prevotella enoeca 76123 S 42 11 53 0.00000 | |
| 333 Prevotella intermedia 28131 S 11 4 15 0.00000 | |
| 334 Phocaeicola vulgatus 821 S 34 22 56 0.00000 | |
| 335 Tannerella forsythia 28112 S 14 1 15 0.00000 | |
| 336 Porphyromonas endodontalis 28124 S 20 0 20 0.00000 | |
| 337 Butyricimonas faecalis 2093856 S 12 11 23 0.00000 | |
| 338 Polaribacter sp. HaHaR_3_91 2745561 S 13 0 13 0.00000 | |
| 339 Treponema sp. Marseille-Q4132 2766701 S 15 2 17 0.00000 | |
| 340 Treponema socranskii 53419 S 15 2 17 0.00000 | |
| 341 Fusobacterium necrophorum 859 S 24 1 25 0.00000 | |
| 342 Fusobacterium nucleatum 851 S 18 0 18 0.00000 | |
| 343 Homo sapiens 9606 S 363 0 363 0.00001 | |
| 344 Malassezia restricta 76775 S 20 0 20 0.00000 | |
| 345 Sporisorium graminicola 280036 S 10 0 10 0.00000 |