Mercurial > repos > iuc > krakentools_alpha_diversity

comparison alpha_diversity.xml @ 5:c3ddd34c7672 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/krakentools commit 60eb96ad3ff782075ca1f29e26ffe5487bbb93ed
author iuc
date Fri, 22 Nov 2024 09:25:53 +0000
parents 4754ef382556
children
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4:552781d1914c 5:c3ddd34c7672
2 <description>from the Bracken abundance estimation file</description> 2 <description>from the Bracken abundance estimation file</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="biotools"/> 6 <expand macro="biotools"/>
7 <expand macro="requirements"> 7 <expand macro="requirements"/>
8 <requirement type="package" version="1.9.3">scipy</requirement>
9 </expand>
10 <expand macro="version"/> 8 <expand macro="version"/>
11 <command detect_errors="exit_code"><![CDATA[ 9 <command detect_errors="exit_code"><![CDATA[
12 alpha_diversity.py 10 alpha_diversity.py
13 --filename '$filename' 11 --filename '$filename'
14 --alpha '$alpha' 12 --alpha '$alpha'
31 <test> 29 <test>
32 <param name="filename" value="bracken_abundance.tabular"/> 30 <param name="filename" value="bracken_abundance.tabular"/>
33 <param name="alpha" value="Sh"/> 31 <param name="alpha" value="Sh"/>
34 <output name="output" ftype="txt"> 32 <output name="output" ftype="txt">
35 <assert_contents> 33 <assert_contents>
36 <has_text text="Shannon's diversity: 4.194127607417342"/> 34 <has_text text="Shannon's diversity: 4.194127607417341"/>
37 </assert_contents> 35 </assert_contents>
38 </output> 36 </output>
39 </test> 37 </test>
40 <test> 38 <test>
41 <param name="filename" value="bracken_abundance.tabular"/> 39 <param name="filename" value="bracken_abundance.tabular"/>