Mercurial > repos > iuc > khmer_partition

comparison do-partition.xml @ 11:bd185cf6bd34 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/khmer commit 238d0992c63de53623c4fc05eec8bd8d67001997
author iuc
date Thu, 03 Oct 2024 13:44:33 +0000
parents 02bc1ef43ef7
children
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10:02bc1ef43ef7 11:bd185cf6bd34
1 <tool id="khmer_partition" name="khmer: Sequence partition all-in-one" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> 1 <tool id="khmer_partition" name="khmer: Sequence partition all-in-one" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
2 <description>Load, partition, and annotate sequences</description> 2 <description>Load, partition, and annotate sequences</description>
3 <expand macro="bio_tools"/>
4 <macros> 3 <macros>
5 <token name="@BINARY@">do-partition.py</token> 4 <token name="@BINARY@">do-partition.py</token>
6 <import>macros.xml</import> 5 <import>macros.xml</import>
7 </macros> 6 </macros>
7 <expand macro="bio_tools"/>
8 <expand macro="requirements" /> 8 <expand macro="requirements" />
9 <expand macro="stdio" /> 9 <expand macro="stdio" />
10 <expand macro="version" /> 10 <expand macro="version" />
11 <command><![CDATA[ 11 <command><![CDATA[
12 set -u && 12 set -u &&
22 <inputs> 22 <inputs>
23 <expand macro="input_sequences_filenames" /> 23 <expand macro="input_sequences_filenames" />
24 <expand macro="tableinputs" /> 24 <expand macro="tableinputs" />
25 </inputs> 25 </inputs>
26 <outputs> 26 <outputs>
27 <data name="information" format="txt" from_work_dir="output.info" label="${tool.name} on ${on_string}: summary." /> 27 <data name="information" format="txt" from_work_dir="output/output.info" label="${tool.name} on ${on_string}: summary" />
28 <expand macro="output_sequences" extension="part"/> 28 <expand macro="output_sequences" extension="part"/>
29 </outputs> 29 </outputs>
30 <tests> 30 <tests>
31 <test> 31 <test>
32 <param name="inputs" value="random-20-a.fa"/> 32 <param name="inputs" value="random-20-a.fa"/>
33 <output name="information">
34 <assert_contents>
35 <has_text text="1 subsets total"/>
36 </assert_contents>
37 </output>
33 <output_collection name="sequences" type="list"> 38 <output_collection name="sequences" type="list">
34 <element name="random-20-a.fa" file="random-20-a.fa.part" /> 39 <element name="random-20-a.fa" file="random-20-a.fa.part" />
35 </output_collection> 40 </output_collection>
36 </test> 41 </test>
37 </tests> 42 </tests>