Mercurial > repos > iuc > khmer_filter_abundance

diff filter-abund.xml @ 11:4fc4b29ec2cd draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/khmer commit 238d0992c63de53623c4fc05eec8bd8d67001997
author iuc
date Thu, 03 Oct 2024 13:44:59 +0000
parents 7610ebc6e155
children
line wrap: on
line diff
--- a/filter-abund.xml	Tue Aug 31 09:11:16 2021 +0000
+++ b/filter-abund.xml	Thu Oct 03 13:44:59 2024 +0000
@@ -2,11 +2,11 @@
     <description>
         by minimal k-mer abundance
     </description>
-    <expand macro="bio_tools"/>
     <macros>
         <token name="@BINARY@">filter-abund.py</token>
         <import>macros.xml</import>
     </macros>
+    <expand macro="bio_tools"/>
     <expand macro="requirements" />
     <expand macro="stdio" />
     <expand macro="version" />
@@ -24,10 +24,10 @@
     </command>
     <inputs>
         <expand macro="input_sequences_filenames" />
-        <param argument="--variable_coverage" name="variable_coverage" type="boolean" checked="false" truevalue="--variable-coverage" falsevalue=""
+        <param argument="--variable_coverage" type="boolean" checked="false" truevalue="--variable-coverage" falsevalue=""
             label="Variable coverage"
             help="Only trim when a sequence has high enough coverage; median abundance > 20" />
-        <param argument="--cutoff" name="cutoff" type="integer" value="2" label="Cutoff"
+        <param argument="--cutoff" type="integer" value="2" label="Cutoff"
             help="Trim at k-mers below this abundance" />
         <expand macro="input_countgraph_filename" />
     </inputs>