diff test-data/all_pathways_class.txt @ 0:6e8f61b987b4 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/kegg_pathways_completeness commit 7352c3ea390d3cd3afe19c0af5be59d8cfbaa7cd
author iuc
date Fri, 05 Dec 2025 17:34:15 +0000
parents
children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/all_pathways_class.txt	Fri Dec 05 17:34:15 2025 +0000
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+M00001:Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism
+M00002:Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism
+M00003:Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism
+M00004:Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism
+M00005:Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism
+M00006:Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism
+M00007:Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism
+M00008:Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism
+M00009:Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism
+M00010:Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism
+M00011:Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism
+M00012:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism
+M00013:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism
+M00014:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism
+M00015:Pathway modules; Amino acid metabolism; Arginine and proline metabolism
+M00016:Pathway modules; Amino acid metabolism; Lysine metabolism
+M00017:Pathway modules; Amino acid metabolism; Cysteine and methionine metabolism
+M00018:Pathway modules; Amino acid metabolism; Serine and threonine metabolism
+M00019:Pathway modules; Amino acid metabolism; Branched-chain amino acid metabolism
+M00020:Pathway modules; Amino acid metabolism; Serine and threonine metabolism
+M00021:Pathway modules; Amino acid metabolism; Cysteine and methionine metabolism
+M00022:Pathway modules; Amino acid metabolism; Aromatic amino acid metabolism
+M00023:Pathway modules; Amino acid metabolism; Aromatic amino acid metabolism
+M00024:Pathway modules; Amino acid metabolism; Aromatic amino acid metabolism
+M00025:Pathway modules; Amino acid metabolism; Aromatic amino acid metabolism
+M00026:Pathway modules; Amino acid metabolism; Histidine metabolism
+M00027:Pathway modules; Amino acid metabolism; Other amino acid metabolism
+M00028:Pathway modules; Amino acid metabolism; Arginine and proline metabolism
+M00029:Pathway modules; Amino acid metabolism; Arginine and proline metabolism
+M00030:Pathway modules; Amino acid metabolism; Lysine metabolism
+M00031:Pathway modules; Amino acid metabolism; Lysine metabolism
+M00032:Pathway modules; Amino acid metabolism; Lysine metabolism
+M00033:Pathway modules; Amino acid metabolism; Serine and threonine metabolism
+M00034:Pathway modules; Amino acid metabolism; Cysteine and methionine metabolism
+M00035:Pathway modules; Amino acid metabolism; Cysteine and methionine metabolism
+M00036:Pathway modules; Amino acid metabolism; Branched-chain amino acid metabolism
+M00037:Pathway modules; Amino acid metabolism; Aromatic amino acid metabolism
+M00038:Pathway modules; Amino acid metabolism; Aromatic amino acid metabolism
+M00039:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds
+M00040:Pathway modules; Amino acid metabolism; Aromatic amino acid metabolism
+M00042:Pathway modules; Amino acid metabolism; Aromatic amino acid metabolism
+M00043:Pathway modules; Amino acid metabolism; Aromatic amino acid metabolism
+M00044:Pathway modules; Amino acid metabolism; Aromatic amino acid metabolism
+M00045:Pathway modules; Amino acid metabolism; Histidine metabolism
+M00046:Pathway modules; Nucleotide metabolism; Pyrimidine metabolism
+M00047:Pathway modules; Amino acid metabolism; Arginine and proline metabolism
+M00048:Pathway modules; Nucleotide metabolism; Purine metabolism
+M00049:Pathway modules; Nucleotide metabolism; Purine metabolism
+M00050:Pathway modules; Nucleotide metabolism; Purine metabolism
+M00051:Pathway modules; Nucleotide metabolism; Pyrimidine metabolism
+M00052:Pathway modules; Nucleotide metabolism; Pyrimidine metabolism
+M00053:Pathway modules; Nucleotide metabolism; Purine metabolism
+M00055:Pathway modules; Glycan metabolism; Glycan biosynthesis
+M00056:Pathway modules; Glycan metabolism; Glycan biosynthesis
+M00057:Pathway modules; Glycan metabolism; Glycosaminoglycan metabolism
+M00058:Pathway modules; Glycan metabolism; Glycosaminoglycan metabolism
+M00059:Pathway modules; Glycan metabolism; Glycosaminoglycan metabolism
+M00060:Pathway modules; Glycan metabolism; Lipopolysaccharide metabolism
+M00061:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism
+M00063:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M00064:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M00065:Pathway modules; Glycan metabolism; Glycan biosynthesis
+M00066:Pathway modules; Lipid metabolism; Lipid metabolism
+M00067:Pathway modules; Lipid metabolism; Lipid metabolism
+M00068:Pathway modules; Glycan metabolism; Glycan biosynthesis
+M00069:Pathway modules; Glycan metabolism; Glycan biosynthesis
+M00070:Pathway modules; Glycan metabolism; Glycan biosynthesis
+M00071:Pathway modules; Glycan metabolism; Glycan biosynthesis
+M00072:Pathway modules; Glycan metabolism; Glycan biosynthesis
+M00073:Pathway modules; Glycan metabolism; Glycan biosynthesis
+M00074:Pathway modules; Glycan metabolism; Glycan biosynthesis
+M00075:Pathway modules; Glycan metabolism; Glycan biosynthesis
+M00076:Pathway modules; Glycan metabolism; Glycosaminoglycan metabolism
+M00077:Pathway modules; Glycan metabolism; Glycosaminoglycan metabolism
+M00078:Pathway modules; Glycan metabolism; Glycosaminoglycan metabolism
+M00079:Pathway modules; Glycan metabolism; Glycosaminoglycan metabolism
+M00081:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism
+M00082:Pathway modules; Lipid metabolism; Fatty acid metabolism
+M00083:Pathway modules; Lipid metabolism; Fatty acid metabolism
+M00085:Pathway modules; Lipid metabolism; Fatty acid metabolism
+M00086:Pathway modules; Lipid metabolism; Fatty acid metabolism
+M00087:Pathway modules; Lipid metabolism; Fatty acid metabolism
+M00088:Pathway modules; Lipid metabolism; Lipid metabolism
+M00089:Pathway modules; Lipid metabolism; Lipid metabolism
+M00090:Pathway modules; Lipid metabolism; Lipid metabolism
+M00091:Pathway modules; Lipid metabolism; Lipid metabolism
+M00092:Pathway modules; Lipid metabolism; Lipid metabolism
+M00093:Pathway modules; Lipid metabolism; Lipid metabolism
+M00094:Pathway modules; Lipid metabolism; Lipid metabolism
+M00095:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid backbone biosynthesis
+M00096:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid backbone biosynthesis
+M00097:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid biosynthesis
+M00098:Pathway modules; Lipid metabolism; Lipid metabolism
+M00099:Pathway modules; Lipid metabolism; Lipid metabolism
+M00100:Pathway modules; Lipid metabolism; Lipid metabolism
+M00101:Pathway modules; Lipid metabolism; Sterol biosynthesis
+M00102:Pathway modules; Lipid metabolism; Sterol biosynthesis
+M00103:Pathway modules; Lipid metabolism; Sterol biosynthesis
+M00104:Pathway modules; Lipid metabolism; Sterol biosynthesis
+M00106:Pathway modules; Lipid metabolism; Sterol biosynthesis
+M00107:Pathway modules; Lipid metabolism; Sterol biosynthesis
+M00108:Pathway modules; Lipid metabolism; Sterol biosynthesis
+M00109:Pathway modules; Lipid metabolism; Sterol biosynthesis
+M00110:Pathway modules; Lipid metabolism; Sterol biosynthesis
+M00112:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00113:Pathway modules; Lipid metabolism; Lipid metabolism
+M00114:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism
+M00115:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00116:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00117:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00118:Pathway modules; Amino acid metabolism; Other amino acid metabolism
+M00119:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00120:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00121:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00122:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00123:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00124:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00125:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00126:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00127:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00128:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00129:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism
+M00130:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism
+M00131:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism
+M00132:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism
+M00133:Pathway modules; Amino acid metabolism; Polyamine biosynthesis
+M00134:Pathway modules; Amino acid metabolism; Polyamine biosynthesis
+M00135:Pathway modules; Amino acid metabolism; Polyamine biosynthesis
+M00136:Pathway modules; Amino acid metabolism; Polyamine biosynthesis
+M00137:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds
+M00138:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds
+M00140:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00141:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00142:Pathway modules; Energy metabolism; ATP synthesis
+M00143:Pathway modules; Energy metabolism; ATP synthesis
+M00144:Pathway modules; Energy metabolism; ATP synthesis
+M00145:Pathway modules; Energy metabolism; ATP synthesis
+M00146:Pathway modules; Energy metabolism; ATP synthesis
+M00147:Pathway modules; Energy metabolism; ATP synthesis
+M00148:Pathway modules; Energy metabolism; ATP synthesis
+M00149:Pathway modules; Energy metabolism; ATP synthesis
+M00150:Pathway modules; Energy metabolism; ATP synthesis
+M00151:Pathway modules; Energy metabolism; ATP synthesis
+M00152:Pathway modules; Energy metabolism; ATP synthesis
+M00153:Pathway modules; Energy metabolism; ATP synthesis
+M00154:Pathway modules; Energy metabolism; ATP synthesis
+M00155:Pathway modules; Energy metabolism; ATP synthesis
+M00156:Pathway modules; Energy metabolism; ATP synthesis
+M00157:Pathway modules; Energy metabolism; ATP synthesis
+M00158:Pathway modules; Energy metabolism; ATP synthesis
+M00159:Pathway modules; Energy metabolism; ATP synthesis
+M00160:Pathway modules; Energy metabolism; ATP synthesis
+M00161:Pathway modules; Energy metabolism; Photosynthesis
+M00162:Pathway modules; Energy metabolism; ATP synthesis
+M00163:Pathway modules; Energy metabolism; Photosynthesis
+M00165:Pathway modules; Energy metabolism; Carbon fixation
+M00168:Pathway modules; Energy metabolism; Carbon fixation
+M00169:Pathway modules; Energy metabolism; Carbon fixation
+M00170:Pathway modules; Energy metabolism; Carbon fixation
+M00171:Pathway modules; Energy metabolism; Carbon fixation
+M00172:Pathway modules; Energy metabolism; Carbon fixation
+M00173:Pathway modules; Energy metabolism; Carbon fixation
+M00174:Pathway modules; Energy metabolism; Methane metabolism
+M00175:Pathway modules; Energy metabolism; Nitrogen metabolism
+M00176:Pathway modules; Energy metabolism; Sulfur metabolism
+M00307:Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism
+M00308:Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism
+M00309:Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism
+M00338:Pathway modules; Amino acid metabolism; Cysteine and methionine metabolism
+M00344:Pathway modules; Energy metabolism; Methane metabolism
+M00345:Pathway modules; Energy metabolism; Methane metabolism
+M00346:Pathway modules; Energy metabolism; Methane metabolism
+M00356:Pathway modules; Energy metabolism; Methane metabolism
+M00357:Pathway modules; Energy metabolism; Methane metabolism
+M00358:Pathway modules; Energy metabolism; Methane metabolism
+M00363:Signature modules; Gene set; Pathogenicity
+M00364:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid backbone biosynthesis
+M00365:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid backbone biosynthesis
+M00366:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid backbone biosynthesis
+M00367:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid backbone biosynthesis
+M00368:Pathway modules; Amino acid metabolism; Cysteine and methionine metabolism
+M00369:Pathway modules; Amino acid metabolism; Other amino acid metabolism
+M00370:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds
+M00371:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid biosynthesis
+M00372:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid biosynthesis
+M00373:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism
+M00374:Pathway modules; Energy metabolism; Carbon fixation
+M00375:Pathway modules; Energy metabolism; Carbon fixation
+M00376:Pathway modules; Energy metabolism; Carbon fixation
+M00377:Pathway modules; Energy metabolism; Carbon fixation
+M00378:Pathway modules; Energy metabolism; Methane metabolism
+M00415:Pathway modules; Lipid metabolism; Fatty acid metabolism
+M00416:Pathway modules; Energy metabolism; ATP synthesis
+M00417:Pathway modules; Energy metabolism; ATP synthesis
+M00418:Pathway modules; Xenobiotics biodegradation; Aromatics degradation
+M00419:Pathway modules; Xenobiotics biodegradation; Aromatics degradation
+M00422:Pathway modules; Energy metabolism; Methane metabolism
+M00432:Pathway modules; Amino acid metabolism; Branched-chain amino acid metabolism
+M00433:Pathway modules; Amino acid metabolism; Lysine metabolism
+M00525:Pathway modules; Amino acid metabolism; Lysine metabolism
+M00526:Pathway modules; Amino acid metabolism; Lysine metabolism
+M00527:Pathway modules; Amino acid metabolism; Lysine metabolism
+M00528:Pathway modules; Energy metabolism; Nitrogen metabolism
+M00529:Pathway modules; Energy metabolism; Nitrogen metabolism
+M00530:Pathway modules; Energy metabolism; Nitrogen metabolism
+M00531:Pathway modules; Energy metabolism; Nitrogen metabolism
+M00532:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism
+M00533:Pathway modules; Amino acid metabolism; Aromatic amino acid metabolism
+M00534:Pathway modules; Xenobiotics biodegradation; Aromatics degradation
+M00535:Pathway modules; Amino acid metabolism; Branched-chain amino acid metabolism
+M00537:Pathway modules; Xenobiotics biodegradation; Aromatics degradation
+M00538:Pathway modules; Xenobiotics biodegradation; Aromatics degradation
+M00539:Pathway modules; Xenobiotics biodegradation; Aromatics degradation
+M00540:Pathway modules; Xenobiotics biodegradation; Aromatics degradation
+M00541:Pathway modules; Xenobiotics biodegradation; Aromatics degradation
+M00542:Signature modules; Gene set; Pathogenicity
+M00543:Pathway modules; Xenobiotics biodegradation; Aromatics degradation
+M00544:Pathway modules; Xenobiotics biodegradation; Aromatics degradation
+M00545:Pathway modules; Xenobiotics biodegradation; Aromatics degradation
+M00546:Pathway modules; Nucleotide metabolism; Purine metabolism
+M00547:Pathway modules; Xenobiotics biodegradation; Aromatics degradation
+M00548:Pathway modules; Xenobiotics biodegradation; Aromatics degradation
+M00549:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M00550:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism
+M00551:Pathway modules; Xenobiotics biodegradation; Aromatics degradation
+M00552:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism
+M00554:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M00555:Pathway modules; Amino acid metabolism; Serine and threonine metabolism
+M00563:Pathway modules; Energy metabolism; Methane metabolism
+M00564:Signature modules; Gene set; Pathogenicity
+M00565:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism
+M00567:Pathway modules; Energy metabolism; Methane metabolism
+M00568:Pathway modules; Xenobiotics biodegradation; Aromatics degradation
+M00569:Pathway modules; Xenobiotics biodegradation; Aromatics degradation
+M00570:Pathway modules; Amino acid metabolism; Branched-chain amino acid metabolism
+M00572:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00573:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00574:Signature modules; Gene set; Pathogenicity
+M00575:Signature modules; Gene set; Pathogenicity
+M00576:Signature modules; Gene set; Pathogenicity
+M00577:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00579:Pathway modules; Energy metabolism; Carbon fixation
+M00580:Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism
+M00595:Pathway modules; Energy metabolism; Sulfur metabolism
+M00596:Pathway modules; Energy metabolism; Sulfur metabolism
+M00597:Pathway modules; Energy metabolism; Photosynthesis
+M00598:Pathway modules; Energy metabolism; Photosynthesis
+M00608:Pathway modules; Energy metabolism; Methane metabolism
+M00609:Pathway modules; Amino acid metabolism; Cysteine and methionine metabolism
+M00611:Signature modules; Module set; Metabolic capacity
+M00612:Signature modules; Module set; Metabolic capacity
+M00613:Signature modules; Module set; Metabolic capacity
+M00614:Signature modules; Module set; Metabolic capacity
+M00615:Signature modules; Module set; Metabolic capacity
+M00616:Signature modules; Module set; Metabolic capacity
+M00617:Signature modules; Module set; Metabolic capacity
+M00618:Signature modules; Module set; Metabolic capacity
+M00620:Pathway modules; Energy metabolism; Carbon fixation
+M00621:Pathway modules; Amino acid metabolism; Serine and threonine metabolism
+M00622:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00623:Pathway modules; Xenobiotics biodegradation; Aromatics degradation
+M00624:Pathway modules; Xenobiotics biodegradation; Aromatics degradation
+M00625:Signature modules; Gene set; Drug resistance
+M00627:Signature modules; Gene set; Drug resistance
+M00630:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism
+M00631:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism
+M00632:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism
+M00633:Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism
+M00636:Pathway modules; Xenobiotics biodegradation; Aromatics degradation
+M00637:Pathway modules; Xenobiotics biodegradation; Aromatics degradation
+M00638:Pathway modules; Xenobiotics biodegradation; Aromatics degradation
+M00639:Signature modules; Gene set; Drug resistance
+M00641:Signature modules; Gene set; Drug resistance
+M00642:Signature modules; Gene set; Drug resistance
+M00643:Signature modules; Gene set; Drug resistance
+M00649:Signature modules; Gene set; Drug resistance
+M00651:Signature modules; Gene set; Drug resistance
+M00652:Signature modules; Gene set; Drug resistance
+M00660:Signature modules; Gene set; Plant pathogenicity
+M00661:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other fungal compounds
+M00664:Signature modules; Gene set; Symbiosis
+M00672:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of beta-lactams
+M00673:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of beta-lactams
+M00674:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of beta-lactams
+M00675:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of beta-lactams
+M00696:Signature modules; Gene set; Drug resistance
+M00697:Signature modules; Gene set; Drug resistance
+M00698:Signature modules; Gene set; Drug resistance
+M00700:Signature modules; Gene set; Drug resistance
+M00702:Signature modules; Gene set; Drug resistance
+M00704:Signature modules; Gene set; Drug resistance
+M00705:Signature modules; Gene set; Drug resistance
+M00714:Signature modules; Gene set; Drug resistance
+M00718:Signature modules; Gene set; Drug resistance
+M00725:Signature modules; Gene set; Drug resistance
+M00726:Signature modules; Gene set; Drug resistance
+M00730:Signature modules; Gene set; Drug resistance
+M00736:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of beta-lactams
+M00740:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism
+M00741:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism
+M00744:Signature modules; Gene set; Drug resistance
+M00745:Signature modules; Gene set; Drug resistance
+M00746:Signature modules; Gene set; Drug resistance
+M00761:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M00763:Pathway modules; Amino acid metabolism; Arginine and proline metabolism
+M00769:Signature modules; Gene set; Drug resistance
+M00773:Pathway modules; Biosynthesis of terpenoids and polyketides; Macrolide biosynthesis
+M00774:Pathway modules; Biosynthesis of terpenoids and polyketides; Macrolide biosynthesis
+M00775:Pathway modules; Biosynthesis of terpenoids and polyketides; Macrolide biosynthesis
+M00776:Pathway modules; Biosynthesis of terpenoids and polyketides; Macrolide biosynthesis
+M00777:Pathway modules; Biosynthesis of terpenoids and polyketides; Macrolide biosynthesis
+M00778:Pathway modules; Biosynthesis of terpenoids and polyketides; Type II polyketide biosynthesis
+M00779:Pathway modules; Biosynthesis of terpenoids and polyketides; Type II polyketide biosynthesis
+M00780:Pathway modules; Biosynthesis of terpenoids and polyketides; Type II polyketide biosynthesis
+M00781:Pathway modules; Biosynthesis of terpenoids and polyketides; Type II polyketide biosynthesis
+M00782:Pathway modules; Biosynthesis of terpenoids and polyketides; Type II polyketide biosynthesis
+M00783:Pathway modules; Biosynthesis of terpenoids and polyketides; Type II polyketide biosynthesis
+M00784:Pathway modules; Biosynthesis of terpenoids and polyketides; Type II polyketide biosynthesis
+M00785:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other antibiotics
+M00786:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other fungal compounds
+M00787:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other antibiotics
+M00788:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other antibiotics
+M00789:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other bacterial compounds
+M00790:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other bacterial compounds
+M00793:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M00794:Pathway modules; Biosynthesis of terpenoids and polyketides; Polyketide sugar unit biosynthesis
+M00795:Pathway modules; Biosynthesis of terpenoids and polyketides; Polyketide sugar unit biosynthesis
+M00796:Pathway modules; Biosynthesis of terpenoids and polyketides; Polyketide sugar unit biosynthesis
+M00797:Pathway modules; Biosynthesis of terpenoids and polyketides; Polyketide sugar unit biosynthesis
+M00798:Pathway modules; Biosynthesis of terpenoids and polyketides; Polyketide sugar unit biosynthesis
+M00799:Pathway modules; Biosynthesis of terpenoids and polyketides; Polyketide sugar unit biosynthesis
+M00800:Pathway modules; Biosynthesis of terpenoids and polyketides; Polyketide sugar unit biosynthesis
+M00801:Pathway modules; Biosynthesis of terpenoids and polyketides; Polyketide sugar unit biosynthesis
+M00802:Pathway modules; Biosynthesis of terpenoids and polyketides; Polyketide sugar unit biosynthesis
+M00803:Pathway modules; Biosynthesis of terpenoids and polyketides; Polyketide sugar unit biosynthesis
+M00804:Pathway modules; Energy metabolism; Nitrogen metabolism
+M00805:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other bacterial compounds
+M00808:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other bacterial compounds
+M00810:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00811:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00814:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other bacterial compounds
+M00815:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other antibiotics
+M00819:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other antibiotics
+M00823:Pathway modules; Biosynthesis of terpenoids and polyketides; Type II polyketide biosynthesis
+M00824:Pathway modules; Biosynthesis of terpenoids and polyketides; Enediyne biosynthesis
+M00825:Pathway modules; Biosynthesis of terpenoids and polyketides; Enediyne biosynthesis
+M00826:Pathway modules; Biosynthesis of terpenoids and polyketides; Enediyne biosynthesis
+M00827:Pathway modules; Biosynthesis of terpenoids and polyketides; Enediyne biosynthesis
+M00828:Pathway modules; Biosynthesis of terpenoids and polyketides; Enediyne biosynthesis
+M00829:Pathway modules; Biosynthesis of terpenoids and polyketides; Enediyne biosynthesis
+M00830:Pathway modules; Biosynthesis of terpenoids and polyketides; Enediyne biosynthesis
+M00831:Pathway modules; Biosynthesis of terpenoids and polyketides; Enediyne biosynthesis
+M00832:Pathway modules; Biosynthesis of terpenoids and polyketides; Enediyne biosynthesis
+M00833:Pathway modules; Biosynthesis of terpenoids and polyketides; Enediyne biosynthesis
+M00834:Pathway modules; Biosynthesis of terpenoids and polyketides; Enediyne biosynthesis
+M00835:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other bacterial compounds
+M00836:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00837:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other bacterial compounds
+M00838:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other bacterial compounds
+M00840:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00841:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00842:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00843:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00844:Pathway modules; Amino acid metabolism; Arginine and proline metabolism
+M00845:Pathway modules; Amino acid metabolism; Arginine and proline metabolism
+M00846:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00847:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00848:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other antibiotics
+M00849:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid backbone biosynthesis
+M00850:Signature modules; Gene set; Pathogenicity
+M00851:Signature modules; Gene set; Drug resistance
+M00852:Signature modules; Gene set; Pathogenicity
+M00853:Signature modules; Gene set; Pathogenicity
+M00854:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism
+M00855:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism
+M00856:Signature modules; Gene set; Pathogenicity
+M00857:Signature modules; Gene set; Pathogenicity
+M00859:Signature modules; Gene set; Pathogenicity
+M00860:Signature modules; Gene set; Pathogenicity
+M00861:Pathway modules; Lipid metabolism; Fatty acid metabolism
+M00862:Pathway modules; Lipid metabolism; Sterol biosynthesis
+M00866:Pathway modules; Glycan metabolism; Lipopolysaccharide metabolism
+M00867:Pathway modules; Glycan metabolism; Lipopolysaccharide metabolism
+M00868:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00872:Pathway modules; Glycan metabolism; Glycan biosynthesis
+M00873:Pathway modules; Lipid metabolism; Fatty acid metabolism
+M00874:Pathway modules; Lipid metabolism; Fatty acid metabolism
+M00875:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other bacterial compounds
+M00876:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other bacterial compounds
+M00877:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other antibiotics
+M00878:Pathway modules; Xenobiotics biodegradation; Aromatics degradation
+M00879:Pathway modules; Amino acid metabolism; Arginine and proline metabolism
+M00880:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00881:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00882:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00883:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00884:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00885:Pathway modules; Lipid metabolism; Fatty acid metabolism
+M00886:Pathway modules; Lipid metabolism; Fatty acid metabolism
+M00887:Pathway modules; Lipid metabolism; Fatty acid metabolism
+M00888:Pathway modules; Glycan metabolism; Other polysaccharide metabolism
+M00889:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other antibiotics
+M00890:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other antibiotics
+M00891:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other fungal compounds
+M00892:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M00893:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other fungal compounds
+M00894:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds
+M00895:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00896:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00897:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00898:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00899:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00900:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds
+M00901:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other fungal compounds
+M00902:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds
+M00903:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other antibiotics
+M00904:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other antibiotics
+M00905:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other bacterial compounds
+M00906:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other bacterial compounds
+M00909:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M00910:Pathway modules; Amino acid metabolism; Aromatic amino acid metabolism
+M00911:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00912:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00913:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00914:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00915:Pathway modules; Xenobiotics biodegradation; Aromatics degradation
+M00916:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00917:Pathway modules; Lipid metabolism; Sterol biosynthesis
+M00918:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other bacterial compounds
+M00919:Pathway modules; Amino acid metabolism; Serine and threonine metabolism
+M00921:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other bacterial compounds
+M00922:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M00923:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M00924:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00925:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00926:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00927:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid biosynthesis
+M00928:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid biosynthesis
+M00929:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid biosynthesis
+M00930:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00931:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00932:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00933:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00934:Pathway modules; Biosynthesis of terpenoids and polyketides; Macrolide biosynthesis
+M00935:Pathway modules; Energy metabolism; Methane metabolism
+M00936:Pathway modules; Amino acid metabolism; Aromatic amino acid metabolism
+M00937:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other fungal compounds
+M00938:Pathway modules; Nucleotide metabolism; Pyrimidine metabolism
+M00939:Pathway modules; Nucleotide metabolism; Pyrimidine metabolism
+M00940:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds
+M00941:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds
+M00942:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds
+M00943:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds
+M00944:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds
+M00945:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds
+M00946:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds
+M00947:Pathway modules; Amino acid metabolism; Other amino acid metabolism
+M00948:Pathway modules; Amino acid metabolism; Other amino acid metabolism
+M00949:Pathway modules; Amino acid metabolism; Other amino acid metabolism
+M00950:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00951:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other antibiotics
+M00952:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds
+M00953:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds
+M00954:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M00955:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M00956:Pathway modules; Amino acid metabolism; Lysine metabolism
+M00957:Pathway modules; Amino acid metabolism; Lysine metabolism
+M00958:Pathway modules; Nucleotide metabolism; Purine metabolism
+M00959:Pathway modules; Nucleotide metabolism; Purine metabolism
+M00960:Pathway modules; Amino acid metabolism; Lysine metabolism
+M00961:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds
+M00962:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds
+M00963:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds
+M00964:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds
+M00965:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds
+M00966:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds
+M00967:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds
+M00968:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism
+M00969:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other antibiotics
+M00970:Pathway modules; Amino acid metabolism; Arginine and proline metabolism
+M00971:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds
+M00972:Pathway modules; Amino acid metabolism; Arginine and proline metabolism
+M00973:Pathway modules; Energy metabolism; Nitrogen metabolism
+M00974:Pathway modules; Amino acid metabolism; Serine and threonine metabolism
+M00975:Pathway modules; Amino acid metabolism; Serine and threonine metabolism
+M00976:Pathway modules; Lipid metabolism; Sterol biosynthesis
+M00977:Pathway modules; Lipid metabolism; Sterol biosynthesis
+M00978:Pathway modules; Amino acid metabolism; Arginine and proline metabolism
+M00979:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds
+M00980:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds
+M00981:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of phytochemical compounds
+M00982:Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism
+M00983:Pathway modules; Glycan metabolism; Glycan biosynthesis
+M00984:Pathway modules; Energy metabolism; Sulfur metabolism
+M00985:Pathway modules; Energy metabolism; Sulfur metabolism
+M00986:Pathway modules; Energy metabolism; Sulfur metabolism
+M00987:Pathway modules; Energy metabolism; Sulfur metabolism
+M00988:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00989:Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism
+M00990:Pathway modules; Energy metabolism; Sulfur metabolism
+M00991:Pathway modules; Energy metabolism; Sulfur metabolism
+M00992:Pathway modules; Energy metabolism; Sulfur metabolism
+M00993:Pathway modules; Energy metabolism; Sulfur metabolism
+M00994:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M00995:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M00996:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M00997:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M00998:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M00999:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M01000:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M01001:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M01002:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M01003:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M01004:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M01005:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M01006:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M01007:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M01008:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M01009:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M01010:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M01011:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M01012:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M01013:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other compounds
+M01014:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M01015:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M01016:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M01017:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M01018:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M01019:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M01020:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M01021:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M01022:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M01023:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M01024:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M01025:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M01026:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M01027:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M01028:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M01029:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M01030:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M01031:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M01032:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M01033:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M01034:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M01035:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M01036:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M01037:Pathway modules; Glycan metabolism; Nucleotide sugar biosynthesis
+M01038:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid biosynthesis
+M01039:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid biosynthesis
+M01040:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid biosynthesis
+M01041:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid biosynthesis
+M01042:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid biosynthesis
+M01043:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid biosynthesis
+M01044:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid biosynthesis
+M01045:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid biosynthesis
+M01046:Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid biosynthesis
+M01047:Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other compounds