Mercurial > repos > iuc > kallisto_quant

diff kallisto_quant.xml @ 6:a7fdab2e4a37 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/kallisto/ commit f84c314bc721b5b0c7be10eaf287b1830caca241"
author iuc
date Thu, 26 Sep 2019 09:10:18 -0400
parents 782e6a3b0510
children 90e937ec7df8
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line diff
--- a/kallisto_quant.xml	Thu Nov 29 17:03:57 2018 -0500
+++ b/kallisto_quant.xml	Thu Sep 26 09:10:18 2019 -0400
@@ -40,7 +40,7 @@
                 $reads
             #end if
             #if $pseudobam:
-                | samtools sort -O bam -@ \${GALAXY_SLOTS:-1} -o '$pseudobam_output' -
+                | samtools sort -O bam -@ \${GALAXY_SLOTS:-1} -T "\${TMPDIR:-.}" -o '$pseudobam_output' -
             #end if
             && cat run_info.json
         ]]>