# HG changeset patch
# User iuc
# Date 1746607878 0
# Node ID 2e96b145638e451be61a09c8f749ae79b6cfc4d4
# Parent  b67d08ca6c0a3c8fce51ca6a035577fc11b610f0
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/kaiju commit ace4e37c66a95ee5f648b95a92911e1fdf212967

diff -r b67d08ca6c0a -r 2e96b145638e kaiju2table.xml
--- a/kaiju2table.xml	Tue Apr 22 14:02:09 2025 +0000
+++ b/kaiju2table.xml	Wed May 07 08:51:18 2025 +0000
@@ -30,7 +30,7 @@
             $optional.e
             $optional.u
             #if $optional.l
-                -l #echo ".".join($optional.l)
+                -l #echo ",".join($optional.l)
             #end if
     ]]></command>
     <inputs>
diff -r b67d08ca6c0a -r 2e96b145638e macros.xml
--- a/macros.xml	Tue Apr 22 14:02:09 2025 +0000
+++ b/macros.xml	Wed May 07 08:51:18 2025 +0000
@@ -1,6 +1,6 @@
 <macros>
     <token name="@TOOL_VERSION@">1.10.1</token>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@VERSION_SUFFIX@">1</token>
     <token name="@PROFILE@">23.2</token>
 
     <xml name="xrefs">
@@ -22,7 +22,7 @@
     </xml>
 
     <xml name="reference">
-        <param name="reference" type="select" label="kaiju refernce data">
+        <param name="reference" type="select" label="kaiju reference data">
             <options from_data_table="kaiju"/>
             <validator type="no_options" message="No reference data installed. Ask your Galaxy admin."/>
         </param>
@@ -43,6 +43,7 @@
         <param argument="-l" type="select" multiple="true" optional="true" label="Print taxon path containing selected ranks ranks specified ">
             <option value="domain">Domain</option>
             <option value="realm">Realm</option>
+            <option value="superkingdom">Superkingdom</option>
             <option value="kingdom">Kingdom</option>
             <option value="subkingdom">Subkingdom</option>
             <option value="superphylum">Superphylum</option>