Mercurial > repos > iuc > jcvi_gff_stats
diff test-data/summary.txt @ 0:969761993dfc draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jcvi_gff_stats commit f1e2c895bec4b8bf960d54f634c69fe18411846a
| author | iuc |
|---|---|
| date | Thu, 02 Aug 2018 09:57:10 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/summary.txt Thu Aug 02 09:57:10 2018 -0400 @@ -0,0 +1,27 @@ +================================================================== + o all +------------------------------------------------------------------ + Max number of transcripts per gene 1 + Mean exon size 151.1 + Mean gene locus size (first to last exon) 3294.0 + Mean number of distinct exons per gene 8.0 + Mean number of transcripts per gene 1.0 + Mean transcript size (UTR, CDS) 1208.5 + Number of distinct exons 16 + Number of genes 2 +Number of genes with alternative transcript variants 0 (0.0%) + Number of multi-exon genes 2 (100.0%) + Number of predicted transcripts 2 + Number of single-exon genes 0 (0.0%) +------------------------------------------------------------------ +===================================================================================================== + o % GC % of genome Average size (bp) Median size (bp) Number Total length (Mb) +----------------------------------------------------------------------------------------------------- + Exon 50% 20% 151 133 16 0Mb + Gene 43% 56% 3,294 3,294 2 0Mb +Intron 39% 35% 297 250 14 0Mb +----------------------------------------------------------------------------------------------------- +Exon_Length: Min=71 Max=410 N=15 Mean=153.2 SD=92.1160138087 Median=138.0 Sum=2298 +Intron_Length: Min=83 Max=732 N=13 Mean=319.076923077 SD=211.891649212 Median=271.0 Sum=4148 +Gene_Length: Min=579 Max=1719 N=2 Mean=1149.0 SD=570.0 Median=1149.0 Sum=2298 +Exon_Count: Min=6 Max=9 N=2 Mean=7.5 SD=1.5 Median=7.5 Sum=15