Mercurial > repos > iuc > jbrowse2

annotate test-data/gff3/B.gff @ 0:61add3f58f26 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
author iuc
date Thu, 02 Oct 2025 10:19:44 +0000
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61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
iuc
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1 ##gff-version 3
61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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2 ##sequence-region Merlin 1 172788
61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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3 Merlin GeneMark.hmm gene 10 30 . + . ID=Merlin_1;seqid=Merlin
61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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4 Merlin GeneMark.hmm mRNA 14 30 . + . ID=Merlin_1_mRNA;Parent=Merlin_1
61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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5 Merlin GeneMark.hmm CDS 14 20 1000 + 0 ID=Merlin_1_CDS ;Parent=Merlin_1_mRNA
61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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6 Merlin GeneMark.hmm CDS 24 30 500 + 0 ID=Merlin_1_CDS ;Parent=Merlin_1_mRNA
61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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8 Merlin GeneMark.hmm gene 14 30 . + . ID=Merlin_2;seqid=Merlin;color=#00ff00
61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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9 Merlin GeneMark.hmm mRNA 14 30 . + . ID=Merlin_2_mRNA;seqid=Merlin;color=#00ff00;Parent=Merlin_2
61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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10 Merlin GeneMark.hmm CDS 14 20 500 + 0 ID=Merlin_2_CDS ;Parent=Merlin_2_mRNA;color=#0000ff
61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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11 Merlin GeneMark.hmm CDS 24 30 750 + 0 ID=Merlin_2_CDS ;Parent=Merlin_2_mRNA;color=#00ff00
61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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13 Merlin GeneMark.hmm gene 10 30 . + . ID=Merlin_3;seqid=Merlin
61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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14 Merlin GeneMark.hmm mRNA 14 30 . + . ID=Merlin_3A_mRNA;Parent=Merlin_3;color=#0000ff
61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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15 Merlin GeneMark.hmm CDS 14 18 1000 + 0 ID=Merlin_3A_CDS ;Parent=Merlin_3A_mRNA;color=#0000ff
61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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16 Merlin GeneMark.hmm CDS 20 30 800 + 0 ID=Merlin_3A_CDS ;Parent=Merlin_3A_mRNA;color=#0000ff
61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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17 Merlin GeneMark.hmm mRNA 14 30 . + . ID=Merlin_3B_mRNA;Parent=Merlin_3;color=#0000ff
61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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18 Merlin GeneMark.hmm CDS 14 22 400 + 0 ID=Merlin_3B_CDS ;Parent=Merlin_3B_mRNA;color=#0000ff
61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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19 Merlin GeneMark.hmm CDS 24 30 1000 + 0 ID=Merlin_3B_CDS ;Parent=Merlin_3B_mRNA;color=#0000ff
61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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23 Merlin exonerate gene 1740 2300 . + . Name=Apple3;Note=Gene with two splicing models;ID=1
61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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24 Merlin exonerate mRNA 1740 2300 . + . Name=Apple3-a;Note=mRNA A with both CDSs and UTRs;ID=1A;Parent=1;
61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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25 Merlin exonerate UTR 1740 1799 . + . Parent=1A
61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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26 Merlin exonerate CDS 1900 2080 . + 0 Parent=1A
61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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27 Merlin exonerate CDS 2100 2120 . + 2 Parent=1A
61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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28 Merlin exonerate UTR 2120 2300 . + . Parent=1A
61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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29 Merlin exonerate mRNA 1740 2300 . + . Name=Apple3-b;Note=mRNA B with both CDSs and UTRs;ID=1B;Parent=1;
61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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30 Merlin exonerate UTR 1740 1799 . + . Parent=1B
61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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31 Merlin exonerate CDS 1800 1880 . + 0 Parent=1B
61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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32 Merlin exonerate CDS 1900 1950 . + 1 Parent=1B
61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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33 Merlin exonerate CDS 2100 2120 . + 2 Parent=1B
61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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34 Merlin exonerate UTR 2120 2300 . + . Parent=1B
61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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38 # {
61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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39 # "baseUrl": "http://localhost:8000/out/data/"
61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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40 # "compress": 0,
61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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41 # "label": "Transcript",
61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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42 # "storeClass": "JBrowse/Store/SeqFeature/NCList",
61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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43 # "trackType": "JBrowse/View/Track/CanvasFeatures",
61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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44 # "type": "JBrowse/View/Track/CanvasFeatures",
61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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45 # "urlTemplate": "tracks/42ff9cb16c0509f0abb4a76ce14077bc_0/{refseq}/trackData.json",
61add3f58f26 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4fa86613193c985e0cb9a8fc795c56b8bc7b8532
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46 # }