Mercurial > repos > iuc > jbrowse

diff jbrowse-fromdir.xml @ 42:c1451868f8d4 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 0bfb0de98c918860c21808e8832caad9f0535975
author: iuc
date: Thu, 08 Jun 2017 17:31:17 -0400
parents: d5e8d72c432a
children: 845b164a6143
--- a/jbrowse-fromdir.xml	Wed Mar 01 23:50:09 2017 -0500
+++ b/jbrowse-fromdir.xml	Thu Jun 08 17:31:17 2017 -0400
@@ -1,11 +1,10 @@
-<tool id="jbrowse_to_standalone" name="JBrowse - Data Directory to Standalone" version="0.4">
+<tool id="jbrowse_to_standalone" name="JBrowse - Data Directory to Standalone" version="@WRAPPER_VERSION@">
   <description>upgrades the bare data directory to a full JBrowse instance</description>
   <macros>
     <import>macros.xml</import>
   </macros>
   <expand macro="requirements"/>
   <expand macro="stdio"/>
-  <version_command>python jbrowse.py --version</version_command>
   <command><![CDATA[
 ## Create output directory
 mkdir -p $output.files_path &&
@@ -26,15 +25,12 @@
   <outputs>
       <data format="html" name="output" label="#set $name = $input.name.replace('Data Directory', 'Standalone')# $name"/>
   </outputs>
+  <tests>
+  </tests>
   <help><![CDATA[
 Upgrades an existing bare JBrowse "data" directory into a full-fledged JBrowse instance.
 
 @ATTRIBUTION@
 ]]></help>
-  <tests>
-  </tests>
-  <citations>
-    <citation type="doi">10.1101/gr.094607.109</citation>
-  </citations>
+  <expand macro="citations"/>
 </tool>
-