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comparison macros.xml @ 59:e29039f307c4 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 12dff0abf006f6c81f6462cdf4ea9c0c740d1e9c
author iuc
date Mon, 15 Apr 2019 10:30:46 -0400
parents c8772f1f6a38
children 7a4f4d55e8c0
comparison
equal deleted inserted replaced
58:c8772f1f6a38 59:e29039f307c4
12 <requirement type="package" version="0.2.6">tabix</requirement> 12 <requirement type="package" version="0.2.6">tabix</requirement>
13 <yield/> 13 <yield/>
14 </requirements> 14 </requirements>
15 </xml> 15 </xml>
16 <token name="@DATA_DIR@">\$GALAXY_JBROWSE_SHARED_DIR</token> 16 <token name="@DATA_DIR@">\$GALAXY_JBROWSE_SHARED_DIR</token>
17 <token name="@WRAPPER_VERSION@">galaxy2</token> 17 <token name="@WRAPPER_VERSION@">galaxy3</token>
18 <token name="@ATTRIBUTION@"><![CDATA[ 18 <token name="@ATTRIBUTION@"><![CDATA[
19 **Attribution** 19 **Attribution**
20 20
21 This Galaxy tool relies on the JBrowse, maintained by the GMOD Community. The Galaxy wrapper is developed by Eric Rasche 21 This Galaxy tool relies on the JBrowse, maintained by the GMOD Community. The Galaxy wrapper is developed by Eric Rasche
22 ]]> 22 ]]>
285 <param label="JBrowse maxHeight" 285 <param label="JBrowse maxHeight"
286 type="text" 286 type="text"
287 name="max_height" 287 name="max_height"
288 value="@MAXHEIGHT@" 288 value="@MAXHEIGHT@"
289 help="Maximum height that the track is permitted to reach in pixels."/> 289 help="Maximum height that the track is permitted to reach in pixels."/>
290 </section>
291 </xml>
292
293 <xml name="track_custom_config">
294 <section name="jb_custom_config" title="JBrowse Custom Track Config [Advanced]" expanded="false">
295 <repeat name="option" title="Custom Track Config Option">
296 <param name="opt_key" type="text" label="Key for JBrowse track config option"
297 help="Multilevel keys (e.g., 'style.label') are delimited by a period character ('.').">
298 <validator type="regex" message="Key must consist of alphanumeric characters only, possibly separated by the period character ('.')">^[\w]+(\.\w+)*$</validator>
299 </param>
300 <conditional name="opt_value">
301 <param name="val_type" type="select" label="Choose the type of value for the option">
302 <option value="text" selected="true">Text</option>
303 <option value="integer">Integer number</option>
304 <option value="float">Floating point number</option>
305 <option value="boolean">Boolean</option>
306 </param>
307 <when value="text">
308 <param name="val" type="text" label="Value for custom track option."
309 help="Will override other track options set elsewhere.">
310 <validator type="empty_field" />
311 </param>
312 </when>
313 <when value="integer">
314 <param name="val" type="integer" value="0" label="Value for custom track option."
315 help="Will override other track options set elsewhere." />
316 </when>
317 <when value="float">
318 <param name="val" type="float" value="0" label="Value for custom track option."
319 help="Will override other track options set elsewhere." />
320 </when>
321 <when value="boolean">
322 <param name="val" type="boolean" truevalue="true" falsevalue="false"
323 label="Value for custom track option."
324 help="Will override other track options set elsewhere." />
325 </when>
326 </conditional>
327 </repeat>
290 </section> 328 </section>
291 </xml> 329 </xml>
292 330
293 <xml name="track_menu"> 331 <xml name="track_menu">
294 <section name="jbmenu" title="JBrowse Contextual Menu options [Advanced]" expanded="false"> 332 <section name="jbmenu" title="JBrowse Contextual Menu options [Advanced]" expanded="false">