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comparison test-data/endpoints/test.xml @ 53:c6fd9fbd50e7 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit b6f9a87b6091cc881a49e0b6acfadc5e7786967f
author iuc
date Tue, 29 Jan 2019 05:33:26 -0500
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children 46cf483e76d6
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52:809a7b878ab2 53:c6fd9fbd50e7
1 <?xml version="1.0"?>
2 <root>
3 <metadata>
4 <gencode>11</gencode>
5 <genomes>
6 <genome path="/tmp/tmpdcb31B/files/000/dataset_24.dat">
7 <metadata>
8 <dataset id="a1e670e1ea0da54b" hid="1"
9 size="171.6 KB"
10 edam_format="format_1929"
11 file_ext="fasta" />
12 <history id="a90a30fafe298e1e"
13 user_email="test@bx.psu.edu"
14 user_id="2"
15 display_name="test_history"/>
16 <metadata
17 dbkey="?"
18 data_lines="2881"
19 sequences="1"
20 />
21 <tool
22 tool_id="upload1"
23 tool_version="1.1.6"
24 />
25 </metadata>
26 </genome>
27 </genomes>
28 <general>
29 <defaultLocation></defaultLocation>
30 <trackPadding>20</trackPadding>
31
32 <shareLink>true</shareLink>
33 <aboutDescription></aboutDescription>
34 <show_tracklist>true</show_tracklist>
35 <show_nav>true</show_nav>
36 <show_overview>true</show_overview>
37 <show_menu>true</show_menu>
38 <hideGenomeOptions>false</hideGenomeOptions>
39 </general>
40 <galaxyUrl>http://localhost</galaxyUrl>
41 </metadata>
42 <tracks>
43 <track cat="External endpoints" format="rest" visibility="default_off">
44
45 <options>
46 <style>
47 <overridePlugins>False</overridePlugins>
48 <overrideDraggable>False</overrideDraggable>
49 <className>feature</className>
50 <description>Hit_titles</description>
51 <label>description</label>
52 <height>600px</height>
53 <maxHeight>600</maxHeight>
54 </style>
55 <scaling>
56 <method>ignore</method>
57 <scheme>
58 <color>__auto__</color>
59 </scheme>
60 </scaling>
61 <menus>
62 </menus>
63
64 <label>Rest api</label>
65 <rest>
66 <url>http://example.org.external/rest_api/</url>
67 </rest>
68 </options>
69 </track>
70 <track cat="External endpoints" format="sparql" visibility="default_off">
71
72 <options>
73 <style>
74 <overridePlugins>False</overridePlugins>
75 <overrideDraggable>False</overrideDraggable>
76 <className>feature</className>
77 <description>Hit_titles</description>
78 <label>description</label>
79 <height>600px</height>
80 <maxHeight>600</maxHeight>
81 </style>
82 <scaling>
83 <method>ignore</method>
84 <scheme>
85 <color>__auto__</color>
86 </scheme>
87 </scaling>
88 <menus>
89 </menus>
90
91 <label>Sparql endpoint</label>
92 <sparql>
93 <url>http://example.org.external/sparql/</url>
94 <query> DEFINE sql:select-option 'order' prefix rdf: __lt__http://www.w3.org/1999/02/22-rdf-syntax-ns#__gt__ select ?start, ?end, IF( ?faldo_type = faldo:ForwardStrandPosition, 1, IF( ?faldo_type = faldo:ReverseStrandPosition, -1, 0 ) ) as ?strand, str(?obj_type_name) as ?type, str(?label) as ?name, str(?obj_name) as ?description, ?obj as ?uniqueID, ?parent as ?parentUniqueID where { values ?faldo_type { faldo:ForwardStrandPosition faldo:ReverseStrandPosition faldo:BothStrandsPosition } }</query>
95 </sparql>
96 </options>
97 </track>
98 </tracks>
99 <plugins
100 ComboTrackSelector=""
101 Bookmarks=""
102 GCContent=""
103 BlastView="True"
104 theme=""
105 />
106 </root>