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comparison macros.xml @ 55:61a47bf57b3e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 0c51a106c04c2f56f5a172dd74c8494687870e46
author iuc
date Wed, 20 Feb 2019 11:49:38 -0500
parents b4d512ee2d14
children 3576197a8e90
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54:b4d512ee2d14 55:61a47bf57b3e
12 <requirement type="package" version="0.2.6">tabix</requirement> 12 <requirement type="package" version="0.2.6">tabix</requirement>
13 <yield/> 13 <yield/>
14 </requirements> 14 </requirements>
15 </xml> 15 </xml>
16 <token name="@DATA_DIR@">\$GALAXY_JBROWSE_SHARED_DIR</token> 16 <token name="@DATA_DIR@">\$GALAXY_JBROWSE_SHARED_DIR</token>
17 <token name="@WRAPPER_VERSION@">galaxy0</token> 17 <token name="@WRAPPER_VERSION@">galaxy1</token>
18 <token name="@ATTRIBUTION@"><![CDATA[ 18 <token name="@ATTRIBUTION@"><![CDATA[
19 **Attribution** 19 **Attribution**
20 20
21 This Galaxy tool relies on the JBrowse, maintained by the GMOD Community. The Galaxy wrapper is developed by Eric Rasche 21 This Galaxy tool relies on the JBrowse, maintained by the GMOD Community. The Galaxy wrapper is developed by Eric Rasche
22 ]]> 22 ]]>
383 <xml name="citations"> 383 <xml name="citations">
384 <citations> 384 <citations>
385 <citation type="doi">10.1101/gr.094607.109</citation> 385 <citation type="doi">10.1101/gr.094607.109</citation>
386 </citations> 386 </citations>
387 </xml> 387 </xml>
388
389 <xml name="canvas_options">
390 <section name="canvas_options" title="CanvasFeatures Options [Advanced]" expanded="false">
391 <param label="Transcript type"
392 name="transcriptType"
393 type="text"
394 value=""
395 help="If your input files represents transcripts with features not named 'mRNA', give the alternate name here (e.g. 'transcript')"
396 optional="True"/>
397 <param label="Subfeatures type"
398 name="subParts"
399 type="text"
400 value=""
401 help="If you have 'exons' but no corresponding 'CDS' features, specify here the subfeatures that should be displayed (e.g. 'exon')"
402 optional="True"/>
403 <param label="Implied UTRs"
404 name="impliedUTRs"
405 type="boolean"
406 checked="false"
407 truevalue="true"
408 falsevalue="false"
409 help="Check this your input files does not contain UTR features, but the UTR can be 'implied' from the difference between the exon and CDS boundaries"/>
410 </section>
411 </xml>
412
413 <xml name="html_options">
414 <section name="html_options" title="HTMLFeatures Options [Advanced]" expanded="false">
415 <param label="Top level features"
416 name="topLevelFeatures"
417 type="text"
418 value="mRNA"
419 help="Select which top level features should be displayed. If empty, will try to display all features. If your input files represents gene→mRNA→exon/CDS/UTR, you should use mRNA otherwise exons will not be rendered."
420 optional="True"/>
421 </section>
422 </xml>
388 </macros> 423 </macros>