Mercurial > repos > iuc > jasminesv

diff jasminesv.xml @ 1:d4d05a202bc3 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/jasminesv/ commit 600a9e3c1d884e5cf106e4477c7b8223ef105cdb"
author iuc
date Thu, 29 Apr 2021 12:23:33 +0000
parents a4962f14d05d
children
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--- a/jasminesv.xml	Wed Jan 20 19:49:13 2021 +0000
+++ b/jasminesv.xml	Thu Apr 29 12:23:33 2021 +0000
@@ -29,7 +29,7 @@
     'spec_reads=${spec_reads}'
     'spec_len=${spec_len}'
     #if $dup_to_ins.dup_to_ins:
-        'genome_file=reference.fa'
+        'genome_file=reference'
     #end if
 
     ## Flags:
@@ -156,7 +156,7 @@
                 <param name="dup_to_ins" value="--dup_to_ins"/>
                 <conditional name="reference_source">
                     <param name="reference_source_selector" value="history"/>
-                    <param name="ref_file" ftype="fasta" value="genome.fa"/>
+                    <param name="ref_file" ftype="fasta.gz" value="genome.fa.gz"/>
                 </conditional>
             </conditional>
             <output name="out_vcf" file="out1.vcf"/>
@@ -195,3 +195,4 @@
     ]]></help>
     <expand macro="citations"/>
 </tool>
+