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comparison jasminesv.xml @ 1:d4d05a202bc3 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/jasminesv/ commit 600a9e3c1d884e5cf106e4477c7b8223ef105cdb"
author iuc
date Thu, 29 Apr 2021 12:23:33 +0000
parents a4962f14d05d
children
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0:a4962f14d05d 1:d4d05a202bc3
27 'min_support=${min_support}' 27 'min_support=${min_support}'
28 threads=\${GALAXY_SLOTS:-4} 28 threads=\${GALAXY_SLOTS:-4}
29 'spec_reads=${spec_reads}' 29 'spec_reads=${spec_reads}'
30 'spec_len=${spec_len}' 30 'spec_len=${spec_len}'
31 #if $dup_to_ins.dup_to_ins: 31 #if $dup_to_ins.dup_to_ins:
32 'genome_file=reference.fa' 32 'genome_file=reference'
33 #end if 33 #end if
34 34
35 ## Flags: 35 ## Flags:
36 '${ignore_strand}' 36 '${ignore_strand}'
37 '${ignore_type}' 37 '${ignore_type}'
154 <param name="vcf_list" value="a.vcf,b.vcf" ftype="vcf"/> 154 <param name="vcf_list" value="a.vcf,b.vcf" ftype="vcf"/>
155 <conditional name="dup_to_ins"> 155 <conditional name="dup_to_ins">
156 <param name="dup_to_ins" value="--dup_to_ins"/> 156 <param name="dup_to_ins" value="--dup_to_ins"/>
157 <conditional name="reference_source"> 157 <conditional name="reference_source">
158 <param name="reference_source_selector" value="history"/> 158 <param name="reference_source_selector" value="history"/>
159 <param name="ref_file" ftype="fasta" value="genome.fa"/> 159 <param name="ref_file" ftype="fasta.gz" value="genome.fa.gz"/>
160 </conditional> 160 </conditional>
161 </conditional> 161 </conditional>
162 <output name="out_vcf" file="out1.vcf"/> 162 <output name="out_vcf" file="out1.vcf"/>
163 </test> 163 </test>
164 <test expect_num_outputs="1"> 164 <test expect_num_outputs="1">
193 193
194 @REFERENCES@ 194 @REFERENCES@
195 ]]></help> 195 ]]></help>
196 <expand macro="citations"/> 196 <expand macro="citations"/>
197 </tool> 197 </tool>
198