Mercurial > repos > iuc > iwtomics_loadandplot

comparison loadandplot.xml @ 1:b46d45982ff4 draft

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planemo upload for repository https://github.com/fabio-cumbo/IWTomics4Galaxy commit 17b242bd79b92715cf4e3530387aa74a8bcda6bf
author iuc
date Fri, 06 Oct 2017 16:39:48 -0400
parents 8ee5b9036971
children 75ad0900315f
comparison
equal deleted inserted replaced
0:8ee5b9036971 1:b46d45982ff4
13 regionspaths='${region_paths}' 13 regionspaths='${region_paths}'
14 #set region_galaxyids = ','.join( [ str( $r.hid ) for $r in $regions ] ) 14 #set region_galaxyids = ','.join( [ str( $r.hid ) for $r in $regions ] )
15 regionsgalaxyids='c(${region_galaxyids})' 15 regionsgalaxyids='c(${region_galaxyids})'
16 #set region_names = '|'.join( [ str( $r.name ) for $r in $regions ] ) 16 #set region_names = '|'.join( [ str( $r.name ) for $r in $regions ] )
17 regionsfilenames='${region_names}' 17 regionsfilenames='${region_names}'
18 #set region_header = $regionsheader 18 #if $regionsheader:
19 #if $region_header != "": 19 regionsheaderfile='${regionsheader}'
20 regionsheaderfile='${region_header}'
21 #end if 20 #end if
22 21
23 #set feature_paths = '|'.join( [ str( $f ) for $f in $features ] ) 22 #set feature_paths = '|'.join( [ str( $f ) for $f in $features ] )
24 featurespaths='${feature_paths}' 23 featurespaths='${feature_paths}'
25 #set feature_galaxyids = ','.join( [ str( $f.hid ) for $f in $features ] ) 24 #set feature_galaxyids = ','.join( [ str( $f.hid ) for $f in $features ] )
26 featuresgalaxyids='c(${feature_galaxyids})' 25 featuresgalaxyids='c(${feature_galaxyids})'
27 #set feature_names = '|'.join( [ str( $f.name ) for $f in $features ] ) 26 #set feature_names = '|'.join( [ str( $f.name ) for $f in $features ] )
28 featuresfilenames='${feature_names}' 27 featuresfilenames='${feature_names}'
29 #set feature_header = $featuresheader 28 #if $featuresheader:
30 #if $feature_header != "": 29 featuresheaderfile='${featuresheader}'
31 featuresheaderfile='${feature_header}'
32 #end if 30 #end if
33 31
34 smoothing="'${conditionaltype.smoothing}'" 32 smoothing="'${conditionaltype.smoothing}'"
35 start.are.0based='${zerobased}' 33 start.are.0based='${zerobased}'
36 #if $conditionaltype.smoothing == 'no': 34 #if $conditionaltype.smoothing == 'no':