Mercurial > repos > iuc > isoformswitchanalyzer

comparison macros.xml @ 5:69fa05891f9d draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/isoformswitchanalyzer commit 7b7d9892618706dad95641831db8b9f83deb86e1
author iuc
date Fri, 02 Jun 2023 10:26:51 +0000
parents 8575def9219d
children
comparison
equal deleted inserted replaced
4:8575def9219d 5:69fa05891f9d
1 <macros> 1 <macros>
2 <token name="@TOOL_VERSION@">1.20.0</token> 2 <token name="@TOOL_VERSION@">1.20.0</token>
3 <token name="@SUFFIX_VERSION@">4</token> 3 <token name="@SUFFIX_VERSION@">5</token>
4 <xml name="requirements"> 4 <xml name="requirements">
5 <requirements> 5 <requirements>
6 <requirement type="package" version="@TOOL_VERSION@">bioconductor-isoformswitchanalyzer</requirement> 6 <requirement type="package" version="@TOOL_VERSION@">bioconductor-isoformswitchanalyzer</requirement>
7 <requirement type="package" version="2.2.1">r-argparse</requirement> 7 <requirement type="package" version="2.2.1">r-argparse</requirement>
8 <requirement type="package" version="1.0.10">r-dplyr</requirement> 8 <requirement type="package" version="1.0.10">r-dplyr</requirement>
63 </xml> 63 </xml>
64 <xml name="macro_onlyswitching"> 64 <xml name="macro_onlyswitching">
65 <param argument="onlySwitchingGenes" type="boolean" truevalue="--onlySwitchingGenes" falsevalue="" checked="true" label="Only switching genes" help="Only 65 <param argument="onlySwitchingGenes" type="boolean" truevalue="--onlySwitchingGenes" falsevalue="" checked="true" label="Only switching genes" help="Only
66 analyze genes with isoform switches (as indicated by the alpha and dIFcutoff parameters)" /> 66 analyze genes with isoform switches (as indicated by the alpha and dIFcutoff parameters)" />
67 </xml> 67 </xml>
68 <xml name="macro_inputs" token_format="tabular">
69 <section name="first_factor" title="1: Factor level" expanded="true">
70 <param name="factorLevel" type="text" value="FactorLevel" label="First factor level"
71 help="Only letters, numbers and underscores will be retained in this field">
72 <sanitizer>
73 <valid initial="string.letters,string.digits"><add value="_" /></valid>
74 </sanitizer>
75 </param>
76 <param name="trans_counts" type="data" format="@FORMAT@" multiple="true" label="Transcript-level expression measurements"/>
77 </section>
78 <section name="second_factor" title="2: Factor level" expanded="true">
79 <param name="factorLevel" type="text" value="FactorLevel" label="Second factor level"
80 help="Only letters, numbers and underscores will be retained in this field">
81 <sanitizer>
82 <valid initial="string.letters,string.digits"><add value="_" /></valid>
83 </sanitizer>
84 </param>
85 <param name="trans_counts" type="data" format="@FORMAT@" multiple="true" label="Transcript-level expression measurements"/>
86 </section>
87 </xml>
68 </macros> 88 </macros>