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comparison irma.xml @ 2:69ce61289a2a draft

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planemo upload for repository https://github.com/aaronKol/tools-iuc/tree/main/tools/irma commit 90383425c43b2b8de5bb2d87ada1240c7014c1c8
author iuc
date Fri, 24 Jan 2025 21:46:59 +0000
parents 736090e99c59
children 205a59cb55f1
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1:736090e99c59 2:69ce61289a2a
1 <tool id="irma" name="IRMA" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="23.1"> 1 <tool id="irma" name="IRMA" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="23.1">
2 <description>Construct robust assemblies of highly variable RNA viruses</description> 2 <description>Construct robust assemblies of highly variable RNA viruses</description>
3 <macros> 3 <macros>
4 <token name="@TOOL_VERSION@">1.2.0</token> 4 <token name="@TOOL_VERSION@">1.2.0</token>
5 <token name="@VERSION_SUFFIX@">1</token> 5 <token name="@VERSION_SUFFIX@">2</token>
6 </macros> 6 </macros>
7 <xrefs> 7 <xrefs>
8 <xref type="bio.tools">irma-virus</xref> 8 <xref type="bio.tools">irma-virus</xref>
9 </xrefs> 9 </xrefs>
10 <requirements> 10 <requirements>
50 <configfiles> 50 <configfiles>
51 <configfile filename='irma_config.sh'><![CDATA[ 51 <configfile filename='irma_config.sh'><![CDATA[
52 SINGLE_LOCAL_PROC=\${GALAXY_SLOTS:-1} 52 SINGLE_LOCAL_PROC=\${GALAXY_SLOTS:-1}
53 DOUBLE_LOCAL_PROC=\$((SINGLE_LOCAL_PROC/2 + (SINGLE_LOCAL_PROC==1))) 53 DOUBLE_LOCAL_PROC=\$((SINGLE_LOCAL_PROC/2 + (SINGLE_LOCAL_PROC==1)))
54 TMP=\$TMPDIR 54 TMP=\$TMPDIR
55 ASSEM_PROG="MINIMAP2"
55 #if $advanced_config.customize == 'yes': 56 #if $advanced_config.customize == 'yes':
56 #if $advanced_config.reference == 'yes': 57 #if $advanced_config.reference == 'yes':
57 SKIP_E=$advanced_config.reference.SKIP_E 58 SKIP_E=$advanced_config.reference.SKIP_E
58 #end if 59 #end if
59 #if $advanced_config.read_gathering == 'yes': 60 #if $advanced_config.read_gathering == 'yes':