Mercurial > repos > iuc > irissv

diff irissv.xml @ 1:9cba5b855260 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/irissv/ commit e3ffd8ae7c25536658ff3ee76389f0c2a9894b4c"
author iuc
date Mon, 17 May 2021 17:29:06 +0000
parents 1aa0f69923a1
children 6f3e5e591f0b
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line diff
--- a/irissv.xml	Tue Jan 19 20:29:53 2021 +0000
+++ b/irissv.xml	Mon May 17 17:29:06 2021 +0000
@@ -1,5 +1,5 @@
 <?xml version="1.0"?>
-<tool id="irissv" name="Iris" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
+<tool id="irissv" name="Iris" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@">
     <description>Refine insertion sequences</description>
     <macros>
         <import>macros.xml</import>
@@ -12,7 +12,7 @@
     @REF_FASTA@
 
     iris
-        genome_in=reference.fa
+        genome_in=reference
         vcf_in='${in_vcf}'
         reads_in='${in_bam}'
         vcf_out='${out_vcf}'
@@ -74,7 +74,7 @@
         <test expect_num_outputs="1">
             <conditional name="reference_source">
                 <param name="reference_source_selector" value="history"/>
-                <param name="ref_file" ftype="fasta" value="genome.fa"/>
+                <param name="ref_file" ftype="fasta.gz" value="genome.fa.gz"/>
             </conditional>
             <param name="in_vcf" value="sniffles.vcf"/>
             <param name="in_bam" value="iris.bam"/>