Mercurial > repos > iuc > interval2maf

comparison test-data/interval2maf-out3.maf @ 4:5c9d58cfb8ae draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ commit a59b05dd4a79b1b4e14ab1d78202c07a889ab023
author iuc
date Sat, 22 Apr 2023 20:08:22 +0000
parents 86765a767abd
children
comparison
equal deleted inserted replaced
3:86765a767abd 4:5c9d58cfb8ae
342 i mm10.chr16 C 0 C 0 342 i mm10.chr16 C 0 C 0
343 343
344 a score=6521322.0 344 a score=6521322.0
345 s hg38.chr22 21635217 49 + 50818468 CTCCCCCTCCATGTCTAGTGC---CCAGGTGGCCACCAGATTCAAACTCAAG 345 s hg38.chr22 21635217 49 + 50818468 CTCCCCCTCCATGTCTAGTGC---CCAGGTGGCCACCAGATTCAAACTCAAG
346 s eulFla1.LGHW01001899v1 119076 49 + 262521 CTCCCCCTCCACGTCTAATGC---CCAGATCGCCACCAAATTCAGGCTCAAG 346 s eulFla1.LGHW01001899v1 119076 49 + 262521 CTCCCCCTCCACGTCTAATGC---CCAGATCGCCACCAAATTCAGGCTCAAG
347 i eulFla1.LGHW01001899v1 I 1 C 0
347 s mm10.chr16 81066123 46 - 98207768 ------CTCCCCACCTAATGCAGTCCAGATGGCTACCAGATTCAGGCTCAAG 348 s mm10.chr16 81066123 46 - 98207768 ------CTCCCCACCTAATGCAGTCCAGATGGCTACCAGATTCAGGCTCAAG
349 i mm10.chr16 C 0 C 0
348 350
349 a score=31953654.0 351 a score=31953654.0
350 s hg38.chr22 21634684 360 + 50818468 AAAGGCCTCAGTCAGTCCTGCTCCCAGAGGGACTCCCTGCTGTGGGATTCGCTGGGTAGCCAGACCAGCTTTCAGTGGACACAGGAGCAGCCCTTGTCCTGGTTCTCAGGGCTGCTGGGCTCAAGCTCTGGCGTGCCTGAAGCATCAGAGCCGAGGCCTGGAGAACAGGAGCCAATCTTCCGCAAGCGAGAGTTCAATAAGGAGATCAAGTCATTACTGAGCCAGCTGGAGTCCCTCGACCTGCCTGGCTACTGTCCGCTCCGTGAGCCCCATCGCACGCTGAACTTCCTGGCTGACCACCGCCTCTTCCCTGCCCTGCAAAGCGTGGTCAGCCAGGCTGTGGATAAGCTCCGTGGCGCC 352 s hg38.chr22 21634684 360 + 50818468 AAAGGCCTCAGTCAGTCCTGCTCCCAGAGGGACTCCCTGCTGTGGGATTCGCTGGGTAGCCAGACCAGCTTTCAGTGGACACAGGAGCAGCCCTTGTCCTGGTTCTCAGGGCTGCTGGGCTCAAGCTCTGGCGTGCCTGAAGCATCAGAGCCGAGGCCTGGAGAACAGGAGCCAATCTTCCGCAAGCGAGAGTTCAATAAGGAGATCAAGTCATTACTGAGCCAGCTGGAGTCCCTCGACCTGCCTGGCTACTGTCCGCTCCGTGAGCCCCATCGCACGCTGAACTTCCTGGCTGACCACCGCCTCTTCCCTGCCCTGCAAAGCGTGGTCAGCCAGGCTGTGGATAAGCTCCGTGGCGCC
351 s eulFla1.LGHW01001899v1 118501 357 + 262521 AAAGGCCTGAGTCAGTCCTGCTCCC---AGGACTCCCTGCTGTGGGACTCGCTGGGCAGCCAGACCAGCAGCCAGTGGACCCAGGAGCAGCCCCTGTCGTGGTTCTCAGGGCTGCTGGACTCAAGTTCAGGCACACCGGAAGCGTCAGTGCTGGGGCCTAGAGAGCGCGAGCTGATCTTCCTCAAGCCGGAGTTCAACAAGGACATCAAGTCGCTACTGAACCAGCCGACATCCTTCAACCCGCCTGGCTACTGTTCACTCCGGCAGCCCCATCGCACCCTGGACTTCCTGGCCAAGCACCACCTCTTCCCCGCCCTGCAGGGTGTGGTCAGCCAGGCTGTGGACAAGCTCAGTGGCGCC 353 s eulFla1.LGHW01001899v1 118501 357 + 262521 AAAGGCCTGAGTCAGTCCTGCTCCC---AGGACTCCCTGCTGTGGGACTCGCTGGGCAGCCAGACCAGCAGCCAGTGGACCCAGGAGCAGCCCCTGTCGTGGTTCTCAGGGCTGCTGGACTCAAGTTCAGGCACACCGGAAGCGTCAGTGCTGGGGCCTAGAGAGCGCGAGCTGATCTTCCTCAAGCCGGAGTTCAACAAGGACATCAAGTCGCTACTGAACCAGCCGACATCCTTCAACCCGCCTGGCTACTGTTCACTCCGGCAGCCCCATCGCACCCTGGACTTCCTGGCCAAGCACCACCTCTTCCCCGCCCTGCAGGGTGTGGTCAGCCAGGCTGTGGACAAGCTCAGTGGCGCC
352 i eulFla1.LGHW01001899v1 C 0 C 0 354 i eulFla1.LGHW01001899v1 C 0 C 0
609 i mm10.chr16 C 0 C 0 611 i mm10.chr16 C 0 C 0
610 612
611 a score=5438213.0 613 a score=5438213.0
612 s hg38.chr22 23394222 60 + 50818468 ATGGCGAGCATGGCAGTGAGCCCCCCACGCCCCACTCTGGGTCTGGAGACCAGCCCCCCA 614 s hg38.chr22 23394222 60 + 50818468 ATGGCGAGCATGGCAGTGAGCCCCCCACGCCCCACTCTGGGTCTGGAGACCAGCCCCCCA
613 s mm10.chr16 18219555 48 + 98207768 ATG------ATGGAGGTAAGTCCCC---ACCCCATTCCTGCT---GATTCCAGCGTCCCC 615 s mm10.chr16 18219555 48 + 98207768 ATG------ATGGAGGTAAGTCCCC---ACCCCATTCCTGCT---GATTCCAGCGTCCCC
616 i mm10.chr16 C 0 C 0
614 617
615 a score=5438213.0 618 a score=5438213.0
616 s hg38.chr22 23394222 60 + 50818468 ATGGCGAGCATGGCAGTGAGCCCCCCACGCCCCACTCTGGGTCTGGAGACCAGCCCCCCA 619 s hg38.chr22 23394222 60 + 50818468 ATGGCGAGCATGGCAGTGAGCCCCCCACGCCCCACTCTGGGTCTGGAGACCAGCCCCCCA
617 s mm10.chr16 18219555 48 + 98207768 ATG------ATGGAGGTAAGTCCCC---ACCCCATTCCTGCT---GATTCCAGCGTCCCC 620 s mm10.chr16 18219555 48 + 98207768 ATG------ATGGAGGTAAGTCCCC---ACCCCATTCCTGCT---GATTCCAGCGTCCCC
618 i mm10.chr16 C 0 C 0 621 i mm10.chr16 C 0 C 0
2219 s hg38.chr22 35727139 55 + 50818468 TGTTCCAGCTCCCGGGGCAGGGCTGTTCGAGGATCCCGTGTGGTTAAACCAGAAG 2222 s hg38.chr22 35727139 55 + 50818468 TGTTCCAGCTCCCGGGGCAGGGCTGTTCGAGGATCCCGTGTGGTTAAACCAGAAG
2220 2223
2221 a score=799075.0 2224 a score=799075.0
2222 s hg38.chr22 35726271 16 + 50818468 TGATGAGGCTGGTATG 2225 s hg38.chr22 35726271 16 + 50818468 TGATGAGGCTGGTATG
2223 s eulFla1.LGHW01001967v1 331202 16 + 548553 TGAAGAGGCTAGCGTG 2226 s eulFla1.LGHW01001967v1 331202 16 + 548553 TGAAGAGGCTAGCGTG
2227 i eulFla1.LGHW01001967v1 C 0 C 0
2224 2228
2225 a score=201690.0 2229 a score=201690.0
2226 s hg38.chr22 35726287 11 + 50818468 CTGTCCTACTT 2230 s hg38.chr22 35726287 11 + 50818468 CTGTCCTACTT
2227 s eulFla1.LGHW01001967v1 331218 11 + 548553 CTGTACCACGT 2231 s eulFla1.LGHW01001967v1 331218 11 + 548553 CTGTACCACGT
2228 i eulFla1.LGHW01001967v1 C 0 C 0 2232 i eulFla1.LGHW01001967v1 C 0 C 0
2302 s hg38.chr22 35727139 55 + 50818468 TGTTCCAGCTCCCGGGGCAGGGCTGTTCGAGGATCCCGTGTGGTTAAACCAGAAG 2306 s hg38.chr22 35727139 55 + 50818468 TGTTCCAGCTCCCGGGGCAGGGCTGTTCGAGGATCCCGTGTGGTTAAACCAGAAG
2303 2307
2304 a score=799075.0 2308 a score=799075.0
2305 s hg38.chr22 35726271 16 + 50818468 TGATGAGGCTGGTATG 2309 s hg38.chr22 35726271 16 + 50818468 TGATGAGGCTGGTATG
2306 s eulFla1.LGHW01001967v1 331202 16 + 548553 TGAAGAGGCTAGCGTG 2310 s eulFla1.LGHW01001967v1 331202 16 + 548553 TGAAGAGGCTAGCGTG
2311 i eulFla1.LGHW01001967v1 C 0 C 0
2307 2312
2308 a score=799075.0 2313 a score=799075.0
2309 s hg38.chr22 35726271 16 + 50818468 TGATGAGGCTGGTATG 2314 s hg38.chr22 35726271 16 + 50818468 TGATGAGGCTGGTATG
2310 s eulFla1.LGHW01001967v1 331202 16 + 548553 TGAAGAGGCTAGCGTG 2315 s eulFla1.LGHW01001967v1 331202 16 + 548553 TGAAGAGGCTAGCGTG
2311 i eulFla1.LGHW01001967v1 C 0 C 0 2316 i eulFla1.LGHW01001967v1 C 0 C 0
2551 2556
2552 a score=668337.0 2557 a score=668337.0
2553 s hg38.chr22 35727139 55 + 50818468 TGTTCCAGCTCCCGGGGCAGGGCTGTTCGAGGATCCCGTGTGGTTAAACCAGAAG 2558 s hg38.chr22 35727139 55 + 50818468 TGTTCCAGCTCCCGGGGCAGGGCTGTTCGAGGATCCCGTGTGGTTAAACCAGAAG
2554 2559
2555 a score=799075.0 2560 a score=799075.0
2556 s hg38.chr22 35726284 3 + 50818468 ATG 2561 s hg38.chr22 35726284 3 + 50818468 ATG
2557 s eulFla1.LGHW01001967v1 331215 3 + 548553 GTG 2562 s eulFla1.LGHW01001967v1 331215 3 + 548553 GTG
2563 i eulFla1.LGHW01001967v1 C 0 C 0
2558 2564
2559 a score=201690.0 2565 a score=201690.0
2560 s hg38.chr22 35726287 11 + 50818468 CTGTCCTACTT 2566 s hg38.chr22 35726287 11 + 50818468 CTGTCCTACTT
2561 s eulFla1.LGHW01001967v1 331218 11 + 548553 CTGTACCACGT 2567 s eulFla1.LGHW01001967v1 331218 11 + 548553 CTGTACCACGT
2562 i eulFla1.LGHW01001967v1 C 0 C 0 2568 i eulFla1.LGHW01001967v1 C 0 C 0
2634 2640
2635 a score=668337.0 2641 a score=668337.0
2636 s hg38.chr22 35727139 55 + 50818468 TGTTCCAGCTCCCGGGGCAGGGCTGTTCGAGGATCCCGTGTGGTTAAACCAGAAG 2642 s hg38.chr22 35727139 55 + 50818468 TGTTCCAGCTCCCGGGGCAGGGCTGTTCGAGGATCCCGTGTGGTTAAACCAGAAG
2637 2643
2638 a score=799075.0 2644 a score=799075.0
2639 s hg38.chr22 35726284 3 + 50818468 ATG 2645 s hg38.chr22 35726284 3 + 50818468 ATG
2640 s eulFla1.LGHW01001967v1 331215 3 + 548553 GTG 2646 s eulFla1.LGHW01001967v1 331215 3 + 548553 GTG
2647 i eulFla1.LGHW01001967v1 C 0 C 0
2641 2648
2642 a score=799075.0 2649 a score=799075.0
2643 s hg38.chr22 35726284 3 + 50818468 ATG 2650 s hg38.chr22 35726284 3 + 50818468 ATG
2644 s eulFla1.LGHW01001967v1 331215 3 + 548553 GTG 2651 s eulFla1.LGHW01001967v1 331215 3 + 548553 GTG
2652 i eulFla1.LGHW01001967v1 C 0 C 0
2645 2653
2646 a score=799075.0 2654 a score=799075.0
2647 s hg38.chr22 35726284 3 + 50818468 ATG 2655 s hg38.chr22 35726284 3 + 50818468 ATG
2648 s eulFla1.LGHW01001967v1 331215 3 + 548553 GTG 2656 s eulFla1.LGHW01001967v1 331215 3 + 548553 GTG
2649 i eulFla1.LGHW01001967v1 C 0 C 0 2657 i eulFla1.LGHW01001967v1 C 0 C 0