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comparison instrain_profile.xml @ 2:00f86e895133 draft default tip

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planemo upload for repository https://github.com/MrOlm/inStrain commit ef9562d6883ba5bca59050ac2477e346f76583f9
author iuc
date Mon, 18 Jul 2022 08:07:38 +0000
parents 25cd792739ef
children
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1:4b77497fdb48 2:00f86e895133
2 <description>Creates an inStrain profile (microdiversity analysis) from a mapping file </description> 2 <description>Creates an inStrain profile (microdiversity analysis) from a mapping file </description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="edam_ontology"/> 6 <expand macro="edam_ontology"/>
7 <expand macro="requirements"> 7 <expand macro="requirements"/>
8 <requirement type="package" version="3.0">zip</requirement>
9 </expand>
10 <version_command>inStrain profile --version</version_command> 8 <version_command>inStrain profile --version</version_command>
11 <command detect_errors="exit_code"><![CDATA[ 9 <command detect_errors="exit_code"><![CDATA[
12 #set ext=$mapping_input.datatype.file_ext 10 #set ext=$mapping_input.datatype.file_ext
13 ln -s '$mapping_input' 'inputbam.$ext' 11 ln -s '$mapping_input' 'inputbam.$ext'
14 #if $gene_profiling.gene_file 12 #if $gene_profiling.gene_file