Mercurial > repos > iuc > infercnv
view test-data/gene_order.tabular @ 1:33d8666a465a draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/infercnv commit 6770266e3437edcb569d9361aadd5ed02caf3662
| author | iuc |
|---|---|
| date | Tue, 27 Aug 2024 13:16:43 +0000 |
| parents | 13d74ecaab08 |
| children |
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WASH7P chr1 14404 29570 LINC00115 chr1 826206 827522 NOC2L chr1 944204 959309 MIR200A chr1 1167863 1167952 SDF4 chr1 1216908 1232031 UBE2J2 chr1 1253909 1273885 SCNN1D chr1 1280436 1292029 ACAP3 chr1 1292376 1309609 PUSL1 chr1 1308567 1311677 AURKAIP1 chr1 1373730 1375495 CCNL2 chr1 1385711 1399328 MRPL20 chr1 1401908 1407313 ANKRD65 chr1 1418420 1421769 ATAD3B chr1 1471769 1497848 SSU72 chr1 1541673 1574869 MMP23B chr1 1632095 1635263 SLC35E2B chr1 1659529 1692728 SLC35E2 chr1 1724838 1745992 GNB1 chr1 1785285 1891117 GABRD chr1 2019298 2030758 PRKCZ chr1 2050470 2185395 RER1 chr1 2391775 2405444 PEX10 chr1 2403964 2413797 PANK4 chr1 2508533 2526628 TNFRSF14 chr1 2555639 2565382 FAM213B chr1 2586491 2591469 WRAP73 chr1 3630767 3652761 LRRC47 chr1 3778558 3796504 DFFB chr1 3857267 3885429 C1orf174 chr1 3889125 3900293 MIR4417 chr1 5564071 5564143 RPL22 chr1 6181269 6209389 ICMT chr1 6221193 6235972 ACOT7 chr1 6264269 6394391 NOL9 chr1 6521347 6554535 KLHL21 chr1 6590724 6614607 PHF13 chr1 6613685 6624033 THAP3 chr1 6624866 6635586 DNAJC11 chr1 6634168 6701924 CAMTA1 chr1 6785324 7769706 VAMP3 chr1 7771269 7781432 PARK7 chr1 7954291 7985505 ERRFI1 chr1 8004404 8026308 SLC45A1 chr1 8317826 8344167 RERE chr1 8352397 8817643 ENO1 chr1 8861002 8879249 SLC2A5 chr1 9035107 9088478 SPSB1 chr1 9292880 9369532 CLSTN1 chr1 9729026 9824526 LZIC chr1 9922113 9943407 NMNAT1 chr1 9943428 9985501 UBE4B chr1 10032832 10181239 KIF1B chr1 10210805 10381603 PGD chr1 10398592 10420144 DFFA chr1 10456522 10472526 TARDBP chr1 11012344 11026420 SRM chr1 11054584 11060024 EXOSC10 chr1 11066618 11099881 MTOR chr1 11106535 11262507 UBIAD1 chr1 11273206 11296049 FBXO44 chr1 11654375 11663327 FBXO6 chr1 11664124 11674354 MAD2L2 chr1 11674480 11691650 AGTRAP chr1 11736084 11754802 CLCN6 chr1 11806096 11843144 NPPA chr1 11845709 11848345 RNU5E-1 chr1 11908152 11908271 PLOD1 chr1 11934205 11975538 MFN2 chr1 11980181 12013514 MIIP chr1 12019466 12032045 TNFRSF1B chr1 12167003 12209228 SNORA70 chr1 12221148 12221271 DHRS3 chr1 12567910 12617731 PRAMEF10 chr1 12892896 12898270 PDPN chr1 13583465 13617957 PRDM2 chr1 13700198 13825079 KAZN chr1 13892792 15118043 CASP9 chr1 15490832 15526534 DNAJC16 chr1 15526813 15592379 FBLIM1 chr1 15756607 15786594 SPEN chr1 15847864 15940460 ZBTB17 chr1 15941869 15976132 FBXO42 chr1 16246839 16352454 SZRD1 chr1 16352575 16398145 NECAP2 chr1 16440672 16460078 NBPF1 chr1 16562319 16613562 CROCCP2 chr1 16618253 16657232 MIR3675 chr1 16858949 16859021 SDHB chr1 17018722 17054170 PADI2 chr1 17066761 17119435 RCC2 chr1 17406760 17439724 ARHGEF10L chr1 17539835 17697874 IGSF21 chr1 18107746 18378483 UBR4 chr1 19074506 19210276 EMC1 chr1 19215664 19251552 MRTO4 chr1 19251539 19260128 AKR7A2 chr1 19303965 19312146 PQLC2 chr1 19312326 19329300 CAPZB chr1 19338776 19485539 MINOS1 chr1 19596977 19629821 TMCO4 chr1 19682213 19799945 VWA5B1 chr1 20290919 20354894 CAMK2N1 chr1 20482391 20486220 MUL1 chr1 20499448 20508161 DDOST chr1 20651767 20661544 HP1BP3 chr1 20742661 20787323 EIF4G3 chr1 20806292 21176888 RAP1GAP chr1 21596215 21669363 USP48 chr1 21678298 21783606 CELA3A chr1 22001656 22012539 LINC00339 chr1 22024558 22031223 CDC42 chr1 22052627 22092946 C1QA chr1 22636506 22639608 C1QC chr1 22643630 22648110 C1QB chr1 22652762 22661538 MIR4684 chr1 22719517 22719598 HNRNPR chr1 23303771 23344336 ZNF436 chr1 23359448 23369442 ASAP3 chr1 23428563 23484568 ID3 chr1 23557918 23559794 RPL11 chr1 23691779 23696425 PITHD1 chr1 23778405 23788232 LYPLA2 chr1 23790970 23795539 GALE chr1 23795599 23800804 HMGCL chr1 23801885 23838620 FUCA1 chr1 23845077 23868294 PNRC2 chr1 23959109 23963462 SRSF10 chr1 23964804 23980927 NIPAL3 chr1 24415794 24472976 SRRM1 chr1 24631716 24673267 CLIC4 chr1 24745357 24844324 SYF2 chr1 25222679 25232502 TMEM50A chr1 25337917 25362361 RHCE chr1 25362249 25430192 MTFR1L chr1 25818640 25832942 STMN1 chr1 25884181 25906991 PAFAH2 chr1 25959767 25998157 SCARNA17 chr1 26006006 26006130 PDIK1L chr1 26111165 26125543 ZNF593 chr1 26169871 26170873 CATSPER4 chr1 26190561 26202968 SH3BGRL3 chr1 26279176 26281522 DHDDS chr1 26432282 26471294 HMGN2 chr1 26472450 26475972 RPS6KA1 chr1 26529761 26575030 ARID1A chr1 26693236 26782104 PIGV chr1 26787472 26798398 GPN2 chr1 26876133 26890297 GPATCH3 chr1 26890488 26900466 NUDC chr1 26900238 26946862 TMEM222 chr1 27322145 27336400 GPR3 chr1 27392644 27395814 WASF2 chr1 27404226 27490158 IFI6 chr1 27666061 27672218 FAM76A chr1 27725979 27763122 STX12 chr1 27773183 27824452 THEMIS2 chr1 27872543 27886685 RPA2 chr1 27891524 27914746 EYA3 chr1 27970344 28088696 PTAFR chr1 28147166 28193936 DNAJC8 chr1 28199456 28233025 ATPIF1 chr1 28236109 28246906 SESN2 chr1 28259527 28282491 MED18 chr1 28329002 28335967 PHACTR4 chr1 28369582 28500369 RCC1 chr1 28505943 28539300 SNHG3 chr1 28505980 28510892 TRNAU1AP chr1 28553085 28578545 SNHG12 chr1 28578538 28582983 TAF12 chr1 28589323 28643085 RAB42 chr1 28592200 28595443 GMEB1 chr1 28668732 28719353 YTHDF2 chr1 28736621 28769775 OPRD1 chr1 28812142 28871267 SRSF4 chr1 29147743 29181987 MECR chr1 29192873 29230942 LAPTM5 chr1 30732469 30757820 SDC3 chr1 30869467 30908761 PUM1 chr1 30931506 31065991 SNRNP40 chr1 31259568 31296782 ZCCHC17 chr1 31296982 31364953 TINAGL1 chr1 31576485 31587686 PEF1 chr1 31629862 31644896 COL16A1 chr1 31652247 31704319 PTP4A2 chr1 31906421 31944856 KHDRBS1 chr1 32013829 32060850 TMEM39B chr1 32072031 32102866 KPNA6 chr1 32108038 32176568 TXLNA chr1 32179686 32198285 CCDC28B chr1 32200386 32205387 TMEM234 chr1 32214472 32222359 EIF3I chr1 32221928 32231604 MTMR9LP chr1 32231658 32241620 HDAC1 chr1 32292086 32333635 MARCKSL1 chr1 32333832 32336379 BSDC1 chr1 32365103 32394731 ZBTB8A chr1 32539427 32605939 ZBTB8OS chr1 32600172 32650903 RBBP4 chr1 32651142 32686211 KIAA1522 chr1 32741885 32774970 YARS chr1 32775237 32818153 S100PBP chr1 32816767 32858879 AK2 chr1 33007940 33080996 ZNF362 chr1 33256545 33300719 PHC2 chr1 33323623 33431052 SMIM12 chr1 34712737 34859816 GJB3 chr1 34781189 34786369 ZMYM1 chr1 35059786 35115859 SFPQ chr1 35176378 35193148 ZMYM4 chr1 35268967 35422058 KIAA0319L chr1 35433490 35557950 NCDN chr1 35557473 35567274 PSMB2 chr1 35599544 35641844 C1orf216 chr1 35713875 35719472 AGO3 chr1 35930718 36072500 ADPRHL2 chr1 36088875 36093932 COL8A2 chr1 36095236 36125220 TRAPPC3 chr1 36136570 36156053 THRAP3 chr1 36224416 36305357 LSM10 chr1 36391238 36397892 MRPS15 chr1 36455718 36464437 CSF3R chr1 36466043 36483278 GRIK3 chr1 36795527 37034129 MEAF6 chr1 37492575 37514774 SNIP1 chr1 37534449 37554344 GNL2 chr1 37566816 37595935 C1orf109 chr1 37681570 37692249 MANEAL chr1 37793802 37801137 C1orf122 chr1 37806979 37809454 INPP5B chr1 37860697 37947057 SNORA63 chr1 37884237 37884317 SF3A3 chr1 37956975 37990921 FHL3 chr1 37996770 38005606 RRAGC chr1 38838198 38859823 AKIRIN1 chr1 38991223 39006059 NDUFS5 chr1 39026318 39034636 MACF1 chr1 39081316 39487177 PPIEL chr1 39531838 39558707 PABPC4 chr1 39560816 39576790 PPIE chr1 39692182 39763914 BMP8B chr1 39757182 39788861 TRIT1 chr1 39841022 39883511 CAP1 chr1 40040233 40072649 PPT1 chr1 40071461 40097727 RLF chr1 40161373 40240921 ZMPSTE24 chr1 40258107 40294184 COL9A2 chr1 40300487 40317816 SMAP2 chr1 40344850 40423326 NFYC chr1 40691648 40771603 CITED4 chr1 40861051 40862366 CTPS1 chr1 40979335 41012565 SCMH1 chr1 41027200 41242154 FOXJ3 chr1 42176539 42335877 ZMYND12 chr1 42430329 42456267 PPIH chr1 42658425 42676758 YBX1 chr1 42682427 42702349 C1orf50 chr1 42767269 42775747 ZNF691 chr1 42846573 42852477 SLC2A1 chr1 42925375 42959173 EBNA1BP2 chr1 43164175 43270936 TMEM125 chr1 43269994 43274002 CDC20 chr1 43358955 43363203 ELOVL1 chr1 43363397 43368074 MED8 chr1 43383917 43389808 SZT2 chr1 43389882 43454247 HYI chr1 43451003 43453989 KDM4A chr1 43650158 43705515 IPO13 chr1 43946939 43968022 DPH2 chr1 43970000 43973369 ATP6V0B chr1 43974487 43978295 SLC6A9 chr1 43991500 44031467 DMAP1 chr1 44213455 44220681 ERI3 chr1 44221070 44355260 RNF220 chr1 44405194 44651724 MIR5584 chr1 44545493 44545552 TMEM53 chr1 44635238 44674555 RPS8 chr1 44775251 44778779 SNORD38B chr1 44778390 44778458 PLK3 chr1 44800225 44805990 EIF2B3 chr1 44850522 44986722 HECTD3 chr1 45002540 45011329 UROD chr1 45012147 45015575 HPDL chr1 45326905 45328533 MUTYH chr1 45329163 45340470 TOE1 chr1 45339670 45343975 PRDX1 chr1 45511036 45523047 AKR1A1 chr1 45550543 45570049 NASP chr1 45583846 45618904 GPBP1L1 chr1 45627304 45688113 TMEM69 chr1 45687214 45694443 IPP chr1 45694324 45750650 PIK3R3 chr1 46040140 46133036 POMGNT1 chr1 46188682 46220305 LRRC41 chr1 46261196 46303608 UQCRH chr1 46303631 46316776 NSUN4 chr1 46340177 46365152 FAAH chr1 46394265 46413848 MKNK1 chr1 46557408 46616843 ATPAF1 chr1 46632737 46673867 EFCAB14 chr1 46675159 46719064 PDZK1IP1 chr1 47183593 47191044 CMPK1 chr1 47333797 47378839 SPATA6 chr1 48295372 48472208 BEND5 chr1 48727523 48776969 ELAVL4 chr1 50048014 50203786 CDKN2C chr1 50960745 50974633 RNF11 chr1 51236271 51273455 EPS15 chr1 51354263 51519328 OSBPL9 chr1 51577179 51798427 TXNDC12 chr1 52020131 52056171 KTI12 chr1 52032103 52033816 BTF3L4 chr1 52056125 52090716 ZFYVE9 chr1 52142094 52346686 ORC1 chr1 52372829 52404459 PRPF38A chr1 52404564 52420839 ZCCHC11 chr1 52408282 52553487 GPX7 chr1 52602372 52609051 ZYG11B chr1 52726467 52827342 SCP2 chr1 52927229 53051703 MIR5095 chr1 52934930 52935017 CPT2 chr1 53196429 53214197 C1orf123 chr1 53214099 53220617 MAGOH chr1 53226892 53238610 LRP8 chr1 53242364 53328070 YIPF1 chr1 53851719 53889834 HSPB11 chr1 53916574 53945929 LRRC42 chr1 53946077 53968168 TMEM59 chr1 54026681 54053504 MRPL37 chr1 54184041 54225464 TTC4 chr1 54715822 54742657 DHCR24 chr1 54849633 54887218 TMEM61 chr1 54980792 54992293 USP24 chr1 55066359 55215113 DAB1 chr1 56994778 58546734 OMA1 chr1 58415384 58546802 JUN chr1 58780788 58784327 NFIA chr1 60865259 61462793 TM2D1 chr1 61681046 61725423 USP1 chr1 62436297 62451804 ATG4C chr1 62784135 62865513 FOXD3 chr1 63323041 63325126 ALG6 chr1 63367590 63438562 ITGB3BP chr1 63440770 63593721 EFCAB7 chr1 63523372 63572693 PGM1 chr1 63593276 63660245 RAVER2 chr1 64745095 64833232 JAK1 chr1 64833229 64966504 AK4 chr1 65147549 65232145 DNAJC6 chr1 65248219 65415869 LEPROT chr1 65420587 65436007 PDE4B chr1 65792514 66374579 MIR3117 chr1 66628440 66628517 MIER1 chr1 66924895 66988619 SERBP1 chr1 67407810 67430415 GADD45A chr1 67685061 67688338 WLS chr1 68098473 68233120 LRRC40 chr1 70144805 70205620 SRSF11 chr1 70205682 70253052 ANKRD13C chr1 70260588 70354734 HHLA3 chr1 70354805 70385339 CTH chr1 70411218 70439851 ZRANB2 chr1 71063291 71081297 NEGR1 chr1 71395940 72282734 CRYZ chr1 74705482 74733408 TYW3 chr1 74733152 74766678 SLC44A5 chr1 75202131 75611116 ACADM chr1 75724347 75787575 RABGGTB chr1 75786197 75795079 ST6GALNAC3 chr1 76074719 76634601 PIGK chr1 77088990 77219430 AK5 chr1 77282051 77559969 ZZZ3 chr1 77562416 77683419 USP33 chr1 77695987 77759852 FUBP1 chr1 77944055 77979110 DNAJB4 chr1 77979175 78017964 IFI44L chr1 78619922 78646145 IFI44 chr1 78649796 78664078 TTLL7 chr1 83865028 83999150 PRKACB chr1 84078062 84238498 RPF1 chr1 84479259 84497790 GNG5 chr1 84498325 84506565 C1orf52 chr1 85249953 85259672 BCL10 chr1 85266248 85277090 DDAH1 chr1 85318481 85578363 ZNHIT6 chr1 85649423 85708433 ODF2L chr1 86346824 86396342 CLCA4 chr1 86547078 86580754 SH3GLB1 chr1 86704570 86748184 PKN2 chr1 88684222 88836255 GTF2B chr1 88852932 88891944 RBMXL1 chr1 88979456 88992960 GBP3 chr1 89006666 89022894 LRRC8D chr1 89821014 89936611 ZNF326 chr1 89995112 90035531 ZNF644 chr1 90915298 91022272