Mercurial > repos > iuc > imagej2_smooth

annotate imagej2_smooth.xml @ 1:97a50ff3df5d draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 8ea6a4271431c05c82b09c0d3e629b13e6ea7936
author iuc
date Fri, 22 Jul 2016 23:17:48 -0400
parents f3ec070f1781
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
1 <?xml version='1.0' encoding='UTF-8'?>
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
2 <tool id="imagej2_smooth" name="Smooth" version="@WRAPPER_VERSION@.0">
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
3 <description></description>
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
4 <macros>
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
5 <import>imagej2_macros.xml</import>
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
6 </macros>
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
7 <expand macro="fiji_requirements" />
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
8 <command>
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
9 <![CDATA[
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
10 python $__tool_directory__/imagej2_smooth.py
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
11 --input "$input"
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
12 --input_datatype $input.ext
1
97a50ff3df5d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 8ea6a4271431c05c82b09c0d3e629b13e6ea7936
iuc
parents: 0
diff changeset
13 --jython_script $__tool_directory__/imagej2_smooth_jython_script.py
0
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
14 --output_datatype $output.ext
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
15 --output "$output"
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
16 ]]>
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
17 </command>
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
18 <inputs>
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
19 <param format="bmp,eps,gif,jpg,pcx,pgm,png,psd,tiff" name="input" type="data" label="Select image"/>
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
20 </inputs>
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
21 <outputs>
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
22 <data name="output" format_source="input" label="${tool.name} on ${on_string}"/>
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
23 </outputs>
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
24 <tests>
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
25 <test>
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
26 <param name="input" value="blobs.gif" />
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
27 <output name="output" file="blobs_smooth.gif" compare="sim_size" />
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
28 </test>
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
29 </tests>
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
30 <help>
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
31
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
32 **What it does**
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
33
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
34 <![CDATA[
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
35
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
36 Blurs the image by replacing each pixel with the average of its 3x3 neighborhood.
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
37
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
38 ]]>
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
39
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
40 </help>
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
41 <expand macro="fiji_headless_citations" />
f3ec070f1781 planemo upload commit 378c3ecfbaed0330faf197811d379431b0f9e92c-dirty
iuc
parents:
diff changeset
42 </tool>