Mercurial > repos > iuc > imagej2_skeletonize3d
comparison imagej2_create_image_jython_script.py @ 3:39e144c3952b draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 8ea6a4271431c05c82b09c0d3e629b13e6ea7936
| author | iuc |
|---|---|
| date | Fri, 22 Jul 2016 23:10:42 -0400 |
| parents | |
| children |
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| 2:99f75b64cdf3 | 3:39e144c3952b |
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| 1 import sys | |
| 2 from ij import IJ | |
| 3 | |
| 4 # Fiji Jython interpreter implements Python 2.5 which does not | |
| 5 # provide support for argparse. | |
| 6 title = sys.argv[ -6 ] | |
| 7 width = int( sys.argv[ -5 ] ) | |
| 8 height = int( sys.argv[ -4 ] ) | |
| 9 depth = int( sys.argv[ -3 ] ) | |
| 10 type = sys.argv[ -2 ].replace( '_', ' ' ) | |
| 11 tmp_image_path = sys.argv[ -1 ] | |
| 12 | |
| 13 imp = IJ.newImage( title, type, width, height, depth ) | |
| 14 IJ.save( imp, "%s" % tmp_image_path ) |