Mercurial > repos > iuc > imagej2_noise

comparison jython_script.py @ 3:d99cf938ad41 draft

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planemo upload commit 18df9e67efd4adafcde4eb9b62cd815e4afe9733-dirty
author iuc
date Wed, 26 Aug 2015 14:37:34 -0400
parents c8fc3f34cbff
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2:c8fc3f34cbff 3:d99cf938ad41
31 # Open the input image file. 31 # Open the input image file.
32 image_plus = IJ.openImage( input ) 32 image_plus = IJ.openImage( input )
33 bit_depth = image_plus.getBitDepth() 33 bit_depth = image_plus.getBitDepth()
34 image_type = image_plus.getType() 34 image_type = image_plus.getType()
35 # Create an ImagePlus object for the image. 35 # Create an ImagePlus object for the image.
36 image_plus_copy = image_plus.createImagePlus() 36 image_plus_copy = image_plus.duplicate()
37 # Make a copy of the image. 37 # Make a copy of the image.
38 image_processor_copy = image_plus.getProcessor().duplicate() 38 image_processor_copy = image_plus_copy.getProcessor()
39 # Set the ImageProcessor on the duplicate ImagePlus object.
40 image_plus_copy.setProcessor( "image copy", image_processor_copy )
41 39
42 # Perform the analysis on the ImagePlus object. 40 # Perform the analysis on the ImagePlus object.
43 if noise == 'add_noise': 41 if noise == 'add_noise':
44 IJ.run( image_plus_copy, "Add Noise", "" ) 42 IJ.run( image_plus_copy, "Add Noise", "" )
45 elif noise == 'add_specified_noise': 43 elif noise == 'add_specified_noise':