--- a/jython_script.py	Sun Oct 11 13:30:58 2015 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,37 +0,0 @@
-import jython_utils
-import sys
-from ij import IJ
-
-# Fiji Jython interpreter implements Python 2.5 which does not
-# provide support for argparse.
-error_log = sys.argv[ -8 ]
-input = sys.argv[ -7 ]
-iterations = int( sys.argv[ -6 ] )
-count = int( sys.argv[ -5 ] )
-black_background = jython_utils.asbool( sys.argv[ -4 ] )
-pad_edges_when_eroding = jython_utils.asbool( sys.argv[ -3 ] )
-tmp_output_path = sys.argv[ -2 ]
-output_datatype = sys.argv[ -1 ]
-
-# Open the input image file.
-input_image_plus = IJ.openImage( input )
-
-# Create a copy of the image.
-input_image_plus_copy = input_image_plus.duplicate()
-image_processor_copy = input_image_plus_copy.getProcessor()
-
-try:
-    # Set binary options.
-    options = jython_utils.get_binary_options( black_background=black_background,
-                                               iterations=iterations,
-                                               count=count,
-                                               pad_edges_when_eroding=pad_edges_when_eroding )
-    IJ.run( input_image_plus_copy, "Options...", options )
-
-    # Run the command.
-    IJ.run( input_image_plus_copy, "Make Binary", "" )
-
-    # Save the ImagePlus object as a new image.
-    IJ.saveAs( input_image_plus_copy, output_datatype, tmp_output_path )
-except Exception, e:
-    jython_utils.handle_error( error_log, str( e ) )