--- a/imagej2_make_binary.py	Tue Aug 04 13:20:29 2015 -0400
+++ b/imagej2_make_binary.py	Wed Aug 26 14:37:41 2015 -0400
@@ -14,8 +14,6 @@
 parser.add_argument( '--black_background', dest='black_background', help='Black background' )
 parser.add_argument( '--pad_edges_when_eroding', dest='pad_edges_when_eroding', help='Pad edges when eroding' )
 parser.add_argument( '--jython_script', dest='jython_script', help='Path to the Jython script' )
-parser.add_argument( '--max_heap_size_type', dest='max_heap_size_type', help='Type (default or megabytes) of max_heap_size value' )
-parser.add_argument( '--max_heap_size', dest='max_heap_size', help='Maximum size of the memory allocation pool used by the JVM.' )
 parser.add_argument( '--output', dest='output', help='Path to the output file' )
 parser.add_argument( '--output_datatype', dest='output_datatype', help='Datatype of the output image' )
 args = parser.parse_args()
@@ -26,8 +24,6 @@
 # extension that points to the Galaxy dataset.  This symlink is used by ImageJ.
 tmp_input_path = imagej2_base_utils.get_input_image_path( tmp_dir, args.input, args.input_datatype )
 tmp_output_path = imagej2_base_utils.get_temporary_image_path( tmp_dir, args.output_datatype )
-# Set the size of the memory allocation pool used by the JVM.
-memory_size = imagej2_base_utils.get_max_heap_size_value( args.max_heap_size_type, args.max_heap_size )
 # Define command response buffers.
 tmp_out = tempfile.NamedTemporaryFile().name
 tmp_stdout = open( tmp_out, 'wb' )
@@ -36,7 +32,7 @@
 # Java writes a lot of stuff to stderr, so we'll specify a file for handling actual errors.
 error_log = tempfile.NamedTemporaryFile( delete=False ).name
 # Build the command line.
-cmd = imagej2_base_utils.get_base_command_imagej2( memory_size, jython_script=args.jython_script )
+cmd = imagej2_base_utils.get_base_command_imagej2( None, jython_script=args.jython_script )
 if cmd is None:
     imagej2_base_utils.stop_err( "ImageJ not found!" )
 cmd += ' %s' % error_log