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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 8ea6a4271431c05c82b09c0d3e629b13e6ea7936
author iuc
date Fri, 22 Jul 2016 23:25:23 -0400
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1 <?xml version='1.0' encoding='UTF-8'?>
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2 <tool id="imagej2_find_edges" name="Find edges" version="@WRAPPER_VERSION@.0">
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3 <description></description>
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4 <macros>
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5 <import>imagej2_macros.xml</import>
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6 </macros>
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7 <expand macro="fiji_requirements" />
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8 <command>
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9 <![CDATA[
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10 python $__tool_directory__/imagej2_find_edges.py
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11 --input "$input"
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12 --input_datatype $input.ext
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8f2e44595a26 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 8ea6a4271431c05c82b09c0d3e629b13e6ea7936
iuc
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13 --jython_script $__tool_directory__/imagej2_find_edges_jython_script.py
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14 --output_datatype $output.ext
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15 --output "$output"
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16 ]]>
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17 </command>
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18 <inputs>
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19 <param format="bmp,eps,gif,jpg,pcx,pgm,png,psd,tiff" name="input" type="data" label="Select image"/>
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20 </inputs>
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21 <outputs>
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22 <data name="output" format_source="input" label="${tool.name} on ${on_string}"/>
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23 </outputs>
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24 <tests>
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25 <test>
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26 <param name="input" value="blobs.gif" />
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27 <output name="output" file="blobs_find_edges.gif" compare="sim_size" />
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28 </test>
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29 </tests>
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30 <help>
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31
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32 **What it does**
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33
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34 Uses a Sobel edge detector to highlight sharp changes in intensity in the active image.
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35 The two 3x3 convolution kernels shown below are used to generate vertical and horizontal
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36 derivatives. The final image is produced by combining the two derivatives using the square
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37 root of the sum of the squares.
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38
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39 ``1 2 1 1 0 -1``
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40
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41 ``0 0 0 2 0 -2``
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42
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43 ``-1 -2 -1 1 0 -1``
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44
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45 </help>
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46 <expand macro="fiji_headless_citations" />
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47 </tool>