Mercurial > repos > iuc > imagej2_create_image
diff imagej2_create_image_jython_script.py @ 6:74b6dd718fef draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 8ea6a4271431c05c82b09c0d3e629b13e6ea7936
| author | iuc |
|---|---|
| date | Fri, 22 Jul 2016 23:12:05 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/imagej2_create_image_jython_script.py Fri Jul 22 23:12:05 2016 -0400 @@ -0,0 +1,14 @@ +import sys +from ij import IJ + +# Fiji Jython interpreter implements Python 2.5 which does not +# provide support for argparse. +title = sys.argv[ -6 ] +width = int( sys.argv[ -5 ] ) +height = int( sys.argv[ -4 ] ) +depth = int( sys.argv[ -3 ] ) +type = sys.argv[ -2 ].replace( '_', ' ' ) +tmp_image_path = sys.argv[ -1 ] + +imp = IJ.newImage( title, type, width, height, depth ) +IJ.save( imp, "%s" % tmp_image_path )