Mercurial > repos > iuc > imagej2_create_image

comparison imagej2_create_image.xml @ 0:dfe318d97378 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
author iuc
date Tue, 09 Jun 2015 12:22:03 -0400
parents
children ea7a01d0f218
comparison
equal deleted inserted replaced
-1:000000000000 0:dfe318d97378
1 <?xml version='1.0' encoding='UTF-8'?>
2 <tool id="imagej2_create_image" name="Create new image" version="1.0.0">
3 <description>with ImageJ2</description>
4 <macros>
5 <import>imagej2_macros.xml</import>
6 </macros>
7 <expand macro="fiji_headless_requirements" />
8 <command>
9 <![CDATA[
10 python $__tool_directory__/imagej2_create_image.py
11 --width $width
12 --height $height
13 --depth $depth
14 --image_type $image_type
15 --image_title "$image_title"
16 --max_heap_size_type $set_max_heap_size.max_heap_size_type
17 --max_heap_size $set_max_heap_size.max_heap_size
18 --jython_script $__tool_directory__/jython_script.py
19 --output_datatype $output_datatype
20 --out_fname "$output"
21 ]]>
22 </command>
23 <inputs>
24 <expand macro="image_type" />
25 <param name="image_title" type="text" size="80" label="Image title" help="Leave blank for no title" />
26 <param name="width" type="integer" value="512" min="1" label="Image width in pixels" />
27 <param name="height" type="integer" value="512" min="1" label="Image height in pixels" />
28 <param name="depth" type="integer" value="1" min="1" label="Image depth" help="Specifies the number of stack slices" />
29 <param name="output_datatype" type="select" label="Save as format">
30 <expand macro="image_datatypes" />
31 </param>
32 <expand macro="max_heap_size_type_conditional" />
33 </inputs>
34 <outputs>
35 <data name="output" format="jpg">
36 <actions>
37 <action type="format">
38 <option type="from_param" name="output_datatype" />
39 </action>
40 </actions>
41 </data>
42 </outputs>
43 <tests>
44 <test>
45 <param name="image_type" value="8-bit_ramp" />
46 <param name="image_title" value="MyTitle" />
47 <param name="width" value="256" />
48 <param name="height" value="256" />
49 <param name="depth" value="1" />
50 <param name="output_datatype" value="jpg" />
51 <output name="output" file="create_image1.jpg" ftype="jpg" />
52 </test>
53 </tests>
54 <help>
55 **What it does**
56
57 <![CDATA[
58 Creates a new image based on the following entries.
59
60 - **Type** specifies the image type "8-bit", "16-bit", "32-bit" or "RGB" with options
61 - **Title** is associated with the image, but not displayed in the image
62 - **Width** specifies the width of the image in pixels
63 - **Height** specifies the height of the image in pixels
64 - **Depth** specifies the number of stack slices
65 - **Format** specifies the image format "jpg", "png", etc
66 ]]>
67
68 </help>
69 <expand macro="fiji_headless_citations" />
70 </tool>