Mercurial > repos > iuc > imagej2_bunwarpj_raw_transform

diff imagej2_bunwarpj_raw_transform.py @ 2:6f129c1ec6d1 draft

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planemo upload commit 98c34e070343a117019ffd25a3af117808159bf5-dirty
author iuc
date Tue, 04 Aug 2015 13:21:24 -0400
parents 0ff301860507
children 2a8118c2ec03
line wrap: on
line diff
--- a/imagej2_bunwarpj_raw_transform.py	Fri Jun 26 05:29:00 2015 -0400
+++ b/imagej2_bunwarpj_raw_transform.py	Tue Aug 04 13:21:24 2015 -0400
@@ -51,7 +51,7 @@
 proc = subprocess.Popen( args=cmd, stderr=tmp_stderr, stdout=tmp_stdout, shell=True )
 rc = proc.wait()
 if rc != 0:
-    error_message = imagej2_base_utils.get_stderr_exception( tmp_err, tmp_stderr, tmp_stdout )
+    error_message = imagej2_base_utils.get_stderr_exception( tmp_err, tmp_stderr, tmp_out, tmp_stdout )
     imagej2_base_utils.stop_err( error_message )
 
 # Convert the registered image to the specified output format.
@@ -70,7 +70,7 @@
 proc = subprocess.Popen( args=cmd, stderr=tmp_stderr, stdout=tmp_stdout, shell=True )
 rc = proc.wait()
 if rc != 0:
-    error_message = imagej2_base_utils.get_stderr_exception( tmp_err, tmp_stderr, tmp_stdout )
+    error_message = imagej2_base_utils.get_stderr_exception( tmp_err, tmp_stderr, tmp_out, tmp_stdout )
     imagej2_base_utils.stop_err( error_message )
 
 # Save the Registered Source Image to the defined output.