Mercurial > repos > iuc > imagej2_bunwarpj_elastic_transform
diff jython_script.py @ 5:666afb216cb7 draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 8ea6a4271431c05c82b09c0d3e629b13e6ea7936
| author | iuc |
|---|---|
| date | Fri, 22 Jul 2016 23:19:19 -0400 |
| parents | 67a5a6f28ba3 |
| children |
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--- a/jython_script.py Sun Oct 11 13:33:06 2015 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,16 +0,0 @@ -import sys -import jython_utils -from ij import IJ - -# Fiji Jython interpreter implements Python 2.5 which does not -# provide support for argparse. - -source_tiff_path = sys.argv[ -3 ] -source_datatype = sys.argv[ -2 ] -source_path = sys.argv[ -1 ] - -# Save the Registered Source Image. -registered_source_image = IJ.openImage( source_tiff_path ) -if source_datatype == 'tiff': - registered_source_image = jython_utils.convert_before_saving_as_tiff( registered_source_image ) -IJ.saveAs( registered_source_image, source_datatype, source_path )