Mercurial > repos > iuc > imagej2_bunwarpj_elastic_transform

comparison imagej2_bunwarpj_elastic_transform.xml @ 5:666afb216cb7 draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 8ea6a4271431c05c82b09c0d3e629b13e6ea7936
author iuc
date Fri, 22 Jul 2016 23:19:19 -0400
parents 887580990db5
children
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4:67a5a6f28ba3 5:666afb216cb7
13 --source_image "$source_image" 13 --source_image "$source_image"
14 --source_image_format $source_image.ext 14 --source_image_format $source_image.ext
15 --elastic_transformation $elastic_transformation 15 --elastic_transformation $elastic_transformation
16 --source_out "$source_out" 16 --source_out "$source_out"
17 --source_out_datatype $source_out_datatype 17 --source_out_datatype $source_out_datatype
18 --jython_script $__tool_directory__/jython_script.py 18 --jython_script $__tool_directory__/imagej2_bunwarpj_elastic_transform_jython_script.py
19 ]]> 19 ]]>
20 </command> 20 </command>
21 <inputs> 21 <inputs>
22 <param format="bmp,eps,gif,jpg,pcx,pgm,png,psd,tiff" name="target_image" type="data" label="Target image"/> 22 <param format="bmp,eps,gif,jpg,pcx,pgm,png,psd,tiff" name="target_image" type="data" label="Target image"/>
23 <param format="bmp,eps,gif,jpg,pcx,pgm,png,psd,tiff" name="source_image" type="data" label="Source image"/> 23 <param format="bmp,eps,gif,jpg,pcx,pgm,png,psd,tiff" name="source_image" type="data" label="Source image"/>
40 <test> 40 <test>
41 <param name="target_image" value="dotblot.jpg" /> 41 <param name="target_image" value="dotblot.jpg" />
42 <param name="source_image" value="blobs.gif" /> 42 <param name="source_image" value="blobs.gif" />
43 <param name="elastic_transformation" value="blobs_direct_transf.txt" /> 43 <param name="elastic_transformation" value="blobs_direct_transf.txt" />
44 <param name="source_out_datatype" value="png" /> 44 <param name="source_out_datatype" value="png" />
45 <output name="source_out" file="registered_source1.png" compare="sim_size" /> 45 <output name="source_out" file="elastic_trans_registered_source1.png" compare="sim_size" />
46 </test> 46 </test>
47 </tests> 47 </tests>
48 <help> 48 <help>
49 **What it does** 49 **What it does**
50 50