--- a/jython_script.py	Sun Oct 11 13:32:11 2015 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,37 +0,0 @@
-import sys
-import jython_utils
-from ij import IJ
-
-# Fiji Jython interpreter implements Python 2.5 which does not
-# provide support for argparse.
-
-if sys.argv[ -1 ].lower() in [ 'true' ]:
-    mono = True
-else:
-    mono = False
-
-if mono:
-    # bUnwarpJ has been called with the -mono param.
-    source_tiff_path = sys.argv[ -4 ]
-    source_datatype = sys.argv[ -3 ]
-    source_path = sys.argv[ -2 ]
-else:
-    source_tiff_path = sys.argv[ -7 ]
-    source_datatype = sys.argv[ -6 ]
-    source_path = sys.argv[ -5 ]
-    target_tiff_path = sys.argv[ -4 ]
-    target_datatype = sys.argv[ -3 ]
-    target_path = sys.argv[ -2 ]
-
-# Save the Registered Source Image.
-registered_source_image = IJ.openImage( source_tiff_path )
-if source_datatype == 'tiff':
-    registered_source_image = jython_utils.convert_before_saving_as_tiff( registered_source_image )
-IJ.saveAs( registered_source_image, source_datatype, source_path )
-
-if not mono:
-    # Save the Registered Target Image.
-    registered_target_image = IJ.openImage( target_tiff_path )
-    if target_datatype == 'tiff':
-        registered_target_image = jython_utils.convert_before_saving_as_tiff( registered_target_image )
-    IJ.saveAs( registered_target_image, target_datatype, target_path )