Mercurial > repos > iuc > imagej2_analyze_skeleton

diff jython_script.py @ 1:dd8e4e000d2f draft

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planemo upload commit 98c34e070343a117019ffd25a3af117808159bf5-dirty
author iuc
date Tue, 04 Aug 2015 13:19:34 -0400
parents a989ca433027
children 9631aab7da53
line wrap: on
line diff
--- a/jython_script.py	Tue Aug 04 11:14:30 2015 -0400
+++ b/jython_script.py	Tue Aug 04 13:19:34 2015 -0400
@@ -125,7 +125,7 @@
 try:
     if image_type not in VALID_IMAGE_TYPES:
         # Convert the image to binary grayscale.
-        IJ.run( input_image_plus_copy, "Make Binary","" )
+        IJ.run( input_image_plus_copy, "Make Binary","iterations=1 count=1 edm=Overwrite do=Nothing" )
     # Run AnalyzeSkeleton
     analyze_skeleton = AnalyzeSkeleton_()
     analyze_skeleton.setup( "", input_image_plus_copy )