Mercurial > repos > iuc > hyphy_fubar

comparison macros.xml @ 5:c7b2b03688b4 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit e31ca8967662206fc17d608efea398502569437a"
author iuc
date Mon, 17 Feb 2020 19:46:14 +0000
parents 5807a4aef9e9
children 23cc51272855
comparison
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4:5807a4aef9e9 5:c7b2b03688b4
78 <requirement type="package" version="@VERSION@"> 78 <requirement type="package" version="@VERSION@">
79 hyphy</requirement> 79 hyphy</requirement>
80 <yield/> 80 <yield/>
81 </requirements> 81 </requirements>
82 </xml> 82 </xml>
83 <token name="@HYPHYMPI@">mpirun -np \${GALAXY_SLOTS:-1} HYPHYMPI</token> 83 <token name="@HYPHYMPI@">\${GALAXY_MPIRUN:-mpirun -np \${GALAXY_SLOTS:-1}} HYPHYMPI</token>
84 <token name="@HYPHY_ENVIRONMENT@"><![CDATA[export HYPHY=`which hyphy` && 84 <token name="@HYPHY_ENVIRONMENT@"><![CDATA[export HYPHY=`which hyphy` &&
85 export HYPHY_PATH=`dirname \$HYPHY` && 85 export HYPHY_PATH=`dirname \$HYPHY` &&
86 export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../lib/hyphy` &&]]></token> 86 export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../lib/hyphy` &&]]></token>
87 <token name="@HYPHY_INVOCATION@"><![CDATA[@HYPHY_ENVIRONMENT@ hyphy LIBPATH=\$HYPHY_LIB ]]></token> 87 <token name="@HYPHY_INVOCATION@"><![CDATA[@HYPHY_ENVIRONMENT@ hyphy LIBPATH=\$HYPHY_LIB ]]></token>
88 </macros> 88 </macros>