Mercurial > repos > iuc > hyphy_fade

diff macros.xml @ 8:3958b19cf6b7 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 751182d5067ac8378199058d9152ebfcaeb4c4b5"
author iuc
date Fri, 27 Mar 2020 16:22:15 +0000
parents 90fbb1c95279
children 0b5b126b518d
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line diff
--- a/macros.xml	Thu Mar 19 13:46:40 2020 +0000
+++ b/macros.xml	Fri Mar 27 16:22:15 2020 +0000
@@ -106,7 +106,7 @@
             <yield/>
         </citations>
     </xml>
-    <token name="@VERSION@">2.5.7</token>
+    <token name="@VERSION@">2.5.8</token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@VERSION@">hyphy</requirement>
@@ -114,6 +114,13 @@
         </requirements>
     </xml>
     <token name="@HYPHYMPI@">\${GALAXY_MPIRUN:-mpirun -np \${GALAXY_SLOTS:-1}} HYPHYMPI</token>
+    <token name="@CATCH_MPIERR@"><![CDATA[
+        EC=\$? ;
+        if [ \$EC -ne 0 ] ; then
+            cat errors.log.mpinode0 >&2 ;
+        fi ;
+        exit \$EC
+    ]]></token>
     <token name="@HYPHY_ENVIRONMENT@"><![CDATA[
         export HYPHY=`which hyphy` &&
         export HYPHY_PATH=`dirname \$HYPHY` &&