Mercurial > repos > iuc > hyphy_conv

diff hyphy_conv.xml @ 12:71ef72fc6dc4 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit d97b1b98a3a621c93a7ed9e7db16bda47eefcb92
author iuc
date Tue, 07 Oct 2025 20:43:38 +0000
parents 1fc726fccf7c
children
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--- a/hyphy_conv.xml	Thu Mar 02 15:00:17 2023 +0000
+++ b/hyphy_conv.xml	Tue Oct 07 20:43:38 2025 +0000
@@ -6,7 +6,7 @@
     <expand macro="requirements"/>
     <command detect_errors="exit_code"><![CDATA[
         cp '$input_file' conv_input.fa &&
-        hyphy conv
+        ENV="TOLERATE_NUMERICAL_ERRORS=1;" hyphy conv
             '$gencodeid'
             '$deletions'
             conv_input.fa
@@ -24,7 +24,7 @@
     <tests>
         <test>
             <param name="input_file" ftype="fasta" value="conv-in1.fa"/>
-            <param name="deletions" value="Keep Deletions" />
+            <param name="deletions" value="true" />
             <output name="proteins" file="conv-out1.nex" />
         </test>
     </tests>