Mercurial > repos > iuc > hyphy_annotate

comparison test-data/summary/nsp7.FADE.json @ 12:6efabd37807b draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit d97b1b98a3a621c93a7ed9e7db16bda47eefcb92
author iuc
date Tue, 07 Oct 2025 20:44:41 +0000
parents d088a1cca4a7
children
comparison
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11:d088a1cca4a7 12:6efabd37807b
1 {
2 "MLE":{
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1737 [1.383043953327127, 5.623952492428782, 0.9468527037797032, 0.9893553457041706],
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1741 [3.859623365517076, 5.621425019413989, 0.947275444651366, 0.9977331689566976]
1742 ]
1743 }
1744 },
1745 "headers": [
1746 ["rate", "Mean posterior relative rate at a site"],
1747 ["bias", "Mean posterior bias parameter at a site"],
1748 ["Prob[bias>0]", "Posterior probability of substitution bias"],
1749 ["BayesFactor[bias>0]", "Empiricial Bayes Factor for substitution bias"]
1750 ]
1751 },
1752 "analysis":{
1753 "authors":"Sergei L Kosakovsky Pond",
1754 "citation":"TBD",
1755 "contact":"spond@temple.edu",
1756 "info":"FADE (FUBAR Approach to Directional Evolution) is a fast method to test whether or not a subset of sites in a protein alignment\n evolve towards a particular residue along a subset of branches at accelerated rates compared to reference model.\n FADE uses a random effects model and latent Dirichlet allocation (LDA) - inspired approximation methods to allocate sites to rate classes.",
1757 "requirements":"A protein alignment and a **rooted** phylogenetic tree (optionally annotated with {})",
1758 "version":"0.2"
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3143 [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82]
3144 ],
3145 "name":"fade.filter.default"
3146 }
3147 },
3148 "fits":{
3149 "GTR":{
3150 "AIC-c":2967.510869163898,
3151 "Equilibrium frequencies": [
3152 [0.06654199837145289],
3153 [0.04576767485681461],
3154 [0.05525385077777924],
3155 [0.04519424520011867],
3156 [0.03818862041597537],
3157 [0.02130923138246088],
3158 [0.02566619302082219],
3159 [0.0451950437843904],
3160 [0.04854677719250092],
3161 [0.1803927248844351],
3162 [0.02526305409009654],
3163 [0.0424505402152829],
3164 [0.001683161308150875],
3165 [0.05708775735485112],
3166 [0.03280851076408917],
3167 [0.08978188365972287],
3168 [0.04282732526330365],
3169 [0.123643641113526],
3170 [0.0120502074111016],
3171 [0.0003475589331250538]
3172 ],
3173 "Log Likelihood":-862.894881898306,
3174 "Rate Distributions":null,
3175 "display order":0,
3176 "estimated parameters":598
3177 }
3178 },
3179 "input":{
3180 "file name":"/home/aglucaci/SARS-CoV-2/clades/B-1-617/nsp7.aa.fas",
3181 "number of sequences":196,
3182 "number of sites":83,
3183 "partition count":1,
3184 "trees":{
3185 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3186 }
3187 },
3188 "settings":{
3189 "bayes factor":100,
3190 "burn-in":1000000,
3191 "chain-length":2000000,
3192 "chains":1,
3193 "concentration":0.5,
3194 "grid size":20,
3195 "method":"Variational-Bayes",
3196 "samples":100
3197 },
3198 "site annotations":{
3199 "headers":{
3200 "Composition":"Amino acid composition of site",
3201 "Substitutions":"Substitution history on selected branches"
3202 },
3203 "site annotations":{
3204 "0": [
3205 ["S11", ""],
3206 ["K11", ""],
3207 ["M11", ""],
3208 ["S11", ""],
3209 ["D11", ""],
3210 ["V11", ""],
3211 ["K11", ""],
3212 ["C11", ""],
3213 ["T11", ""],
3214 ["S11", ""],
3215 ["V11", ""],
3216 ["V11", ""],
3217 ["L11", ""],
3218 ["L11", ""],
3219 ["S11", ""],
3220 ["V11", ""],
3221 ["L11", ""],
3222 ["Q11", ""],
3223 ["Q11", ""],
3224 ["L11", ""],
3225 ["R11", ""],
3226 ["V11", ""],
3227 ["E11", ""],
3228 ["S11", ""],
3229 ["S11", ""],
3230 ["F1,S10", "S->F(1)"],
3231 ["K11", ""],
3232 ["L11", ""],
3233 ["W11", ""],
3234 ["A11", ""],
3235 ["Q11", ""],
3236 ["C11", ""],
3237 ["V11", ""],
3238 ["Q11", ""],
3239 ["L11", ""],
3240 ["H11", ""],
3241 ["N11", ""],
3242 ["D11", ""],
3243 ["I11", ""],
3244 ["L11", ""],
3245 ["L11", ""],
3246 ["A11", ""],
3247 ["K11", ""],
3248 ["D11", ""],
3249 ["T11", ""],
3250 ["T11", ""],
3251 ["E11", ""],
3252 ["A11", ""],
3253 ["F11", ""],
3254 ["E11", ""],
3255 ["K11", ""],
3256 ["M11", ""],
3257 ["V11", ""],
3258 ["S11", ""],
3259 ["L11", ""],
3260 ["L11", ""],
3261 ["S11", ""],
3262 ["V11", ""],
3263 ["L11", ""],
3264 ["L11", ""],
3265 ["S11", ""],
3266 ["M11", ""],
3267 ["Q11", ""],
3268 ["G11", ""],
3269 ["A11", ""],
3270 ["V11", ""],
3271 ["D11", ""],
3272 ["I11", ""],
3273 ["N11", ""],
3274 ["K11", ""],
3275 ["F1,L10", ""],
3276 ["C11", ""],
3277 ["E11", ""],
3278 ["D1,E10", "E->D(1)"],
3279 ["I1,M9,V1", "M->V(1)"],
3280 ["L11", ""],
3281 ["D11", ""],
3282 ["N11", ""],
3283 ["R11", ""],
3284 ["A11", ""],
3285 ["I1,T10", ""],
3286 ["L11", ""],
3287 ["Q11", ""]
3288 ]
3289 }
3290 },
3291 "tested":{
3292 "0":{
3293 "EPI_ISL_1181694_HCOV_19_USA_DE_DHSS_B1064373_2021":"test",
3294 "EPI_ISL_1409773_HCOV_19_ENGLAND_CAMC_141DB08_2021":"test",
3295 "EPI_ISL_1415264_HCOV_19_INDIA_MH_NCCS_128864_2021":"test",
3296 "EPI_ISL_1415273_HCOV_19_INDIA_MH_NCCS_87216_2021":"test",
3297 "EPI_ISL_1416968_HCOV_19_GUADELOUPE_IPP06229_2021":"test",
3298 "EPI_ISL_1564187_HCOV_19_ENGLAND_CAMC_14D5BFD_2021":"test",
3299 "EPI_ISL_1583966_HCOV_19_ENGLAND_CAMC_14D1B4C_2021":"test",
3300 "EPI_ISL_1635400_HCOV_19_SCOTLAND_CAMC_14DEDB2_2021":"test",
3301 "EPI_ISL_1641831_HCOV_19_GERMANY_BY_RKI_I_076082_2021":"test",
3302 "EPI_ISL_1648157_HCOV_19_USA_CA_CDC_QDX23571833_2021":"test",
3303 "EPI_ISL_1652109_HCOV_19_SINGAPORE_565_2021":"test",
3304 "GB_MT226610_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_CHN_KMS1_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3305 "GB_MT291831_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_CHN_BEIJING_IME_BJ01_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3306 "GB_MT380729_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_VI_CDC_1999_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3307 "GB_MT412283_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_CT_UW_5772_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3308 "GB_MT446348_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_LA_BIE_080_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3309 "GB_MT451046_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC142_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3310 "GB_MT451174_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC278_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3311 "GB_MT451724_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC1057_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3312 "GB_MT460125_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_CA_CZB_1105_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3313 "GB_MT470179_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_FRANCE_40002VJ_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3314 "GB_MT499218_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_TUN_COV1663_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3315 "GB_MT512423_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_VI_CDC_3688_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3316 "GB_MT609578_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_VA_DCLS_0348_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3317 "GB_MT609579_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_VA_DCLS_0349_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3318 "GB_MT612207_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC1606_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3319 "GB_MT628119_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_CA_CZB_1404_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3320 "GB_MT628199_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_CA_CZB_1525_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3321 "GB_MT642069_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_WA_S1116_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3322 "GB_MT704128_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_MD_MDH_0028_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3323 "GB_MT731735_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_BGD_BCSIR_NILMRC_137_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3324 "GB_MT755838_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_BGD_BCSIR_NILMRC_245_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3325 "GB_MT786817_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_IN_QDX_182_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3326 "GB_MT810119_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_KOR_CNUHV03_CA22_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3327 "GB_MT810681_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_SEARCH_1240_SAN_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3328 "GB_MT820487_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_SAU_KAIMRC67_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3329 "GB_MT825091_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_IRN_COVID19_IRVSH1_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3330 "GB_MT827207_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_MD_MDH_0041_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3331 "GB_MT831570_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_WA_S2629_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3332 "GB_MT834677_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_FL_BPHL_0519_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3333 "GB_MT856455_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_BGD_BCSIR_NILMRC_306_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3334 "GB_MT873107_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_MA_MGH_00733_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3335 "GB_MT876607_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_BGD_BCSIR_NILMRC_291_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3336 "GB_MT890291_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_FL_BPHL_0812_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3337 "GB_MT890320_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_FL_BPHL_0841_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3338 "GB_MT937322_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_MD_MDH_0133_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3339 "GB_MT937823_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_MD_MDH_0160_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3340 "GB_MT940476_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_IND_GBRC336_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3341 "GB_MT956712_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_FL_BPHL_1102_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3342 "GB_MT966161_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_FL_BPHL_0917_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3343 "GB_MT969815_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC2996_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3344 "GB_MT971875_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC6260_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3345 "GB_MT973055_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC6608_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3346 "GB_MT973439_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_TAS110_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3347 "GB_MT981432_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_COVID20_0585_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3348 "GB_MT990449_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_EGY_CU001A_S1_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3349 "GB_MT992730_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_VA_DCLS_1113_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3350 "GB_MT997720_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_MN_MDH_1602_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3351 "GB_MW012269_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_SRB_NP01_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3352 "GB_MW030253_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_PER_COVPER022_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3353 "GB_MW035496_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_WI_UW_1327_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3354 "GB_MW035538_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_WI_UW_1372_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3355 "GB_MW053925_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_UT_02760_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3356 "GB_MW056173_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_FL_BPHL_1526_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3357 "GB_MW064614_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_MI_QDX_560_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3358 "GB_MW065141_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_IL_QDX_1100_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3359 "GB_MW067706_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_VA_DCLS_1288_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3360 "GB_MW067772_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_VA_DCLS_1293_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3361 "GB_MW067820_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_COVID20_1113_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3362 "GB_MW127521_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_SRB_KS_0796_16_04_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3363 "GB_MW130870_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_WI_CDC_6238_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3364 "GB_MW134122_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_CA_CZB_3285_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3365 "GB_MW153116_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC7846_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3366 "GB_MW155687_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC13648_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3367 "GB_MW156759_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC13581_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3368 "GB_MW156761_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC13590_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3369 "GB_MW156992_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC10174_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3370 "GB_MW181759_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HOMO_SAPIENS_HKG_CASE4999_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3371 "GB_MW206619_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_FL_BPHL_1798_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3372 "GB_MW228252_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_NMDOH_2020309735_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3373 "GB_MW240747_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_MD_MDH_0283_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3374 "GB_MW240753_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_MD_MDH_0289_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3375 "GB_MW276413_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_CA_CZB_10909_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3376 "GB_MW276537_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_CA_CZB_11549_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3377 "GB_MW276545_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_CA_CZB_11572_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3378 "GB_MW276613_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_CA_CZB_11950_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3379 "GB_MW276622_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_CA_CZB_11799_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3380 "GB_MW276661_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_CA_CZB_11859_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3381 "GB_MW276915_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC15878_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3382 "GB_MW277113_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC12012_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3383 "GB_MW277234_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC15990_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3384 "GB_MW277460_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC12022_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3385 "GB_MW277478_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC16104_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3386 "GB_MW281864_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_WEST_BANK_JERICHO_SARS_COV_2_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3387 "GB_MW306408_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_CA_CZB_12385_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3388 "GB_MW320996_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC17273_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3389 "GB_MW321295_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC17192_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3390 "GB_MW332236_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_RUS_2272_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3391 "GB_MW338802_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_VA_DCLS_2062_2020_SEGMENT_NULL_HOST_HUMAN":"background",
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3439 "GB_MW539888_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_MA_MASPHL_00651_2020_SEGMENT_NULL_HOST_HUMAN":"background",
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3454 "GB_MW562737_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_UT_UPHL_2102453487_2020_SEGMENT_NULL_HOST_HUMAN":"background",
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3463 "GB_MW577066_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_NMDOH_2021021590_2021_SEGMENT_NULL_HOST_HUMAN":"background",
3464 "GB_MW577113_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_CA_LACPHL_AF00314_2021_SEGMENT_NULL_HOST_HUMAN":"background",
3465 "GB_MW577730_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_UT_UPHL_2101009422_2021_SEGMENT_NULL_HOST_HUMAN":"background",
3466 "GB_MW577930_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_UT_UPHL_2101239410_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3467 "GB_MW578033_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_UT_UPHL_2101679988_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3468 "GB_MW578122_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_UT_UPHL_2101329819_2021_SEGMENT_NULL_HOST_HUMAN":"background",
3469 "GB_MW578256_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_MO_CDC_2_3714171_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3470 "GB_MW579014_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_UT_UPHL_2101155076_2021_SEGMENT_NULL_HOST_HUMAN":"background",
3471 "GB_MW579030_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_UT_UPHL_2101421353_2021_SEGMENT_NULL_HOST_HUMAN":"background",
3472 "GB_MW583265_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_CA_CDC_STM_000001669_2021_SEGMENT_NULL_HOST_HUMAN":"background",
3473 "GB_MW585982_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_MO_CDC_STM_000003668_2021_SEGMENT_NULL_HOST_HUMAN":"background",
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3475 "GB_MW586140_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_FL_CDC_STM_000005978_2021_SEGMENT_NULL_HOST_HUMAN":"background",
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3479 "GB_MW589574_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_4494168_2021_SEGMENT_NULL_HOST_HUMAN":"background",
3480 "GB_MW589620_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_4464910_2020_SEGMENT_NULL_HOST_HUMAN":"background",
3481 "GB_MW590718_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_IND_GBRC434_2020_SEGMENT_NULL_HOST_HUMAN":"background",
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