Mercurial > repos > iuc > hyphy_annotate
comparison test-data/meme-in1.fa @ 0:be1650bef38c draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
| author | iuc |
|---|---|
| date | Tue, 20 Apr 2021 10:17:07 +0000 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:be1650bef38c |
|---|---|
| 1 >CHICKEN_HEBEI_326_2005 | |
| 2 ATGGAGAGAATAGTGCTTCTTCTTGCAATAATCGGTCTTGTTAAAAGTGA | |
| 3 TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA | |
| 4 CAATAATGGAAAAGAACGTTACTGTTACACATGCTCAAGACATACTGGAG | |
| 5 AAGACACACAACGGGAAGCTCTGCAACCCAGATGGAGTGAAGCCTCTAAT | |
| 6 TTTGAAAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTG | |
| 7 ACGAATTTATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGT | |
| 8 CCAGCCAATGGCCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAACT | |
| 9 GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC | |
| 10 CCAAAAGTTCTTGGTCCGATCATGGAGCCTCATCAGGGGTGAGCTCAGCA | |
| 11 TGTTCCTATCTGGGGAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT | |
| 12 CAAAAAGAATAATACATACCCACCAATAAAGGTGAGCTACAACAATACCA | |
| 13 ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCCAATGATGAG | |
| 14 GCAGAGCAGATAAAGATCTATCAAAACCCAACCACCTATATTTCCGTTGG | |
| 15 AACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCA | |
| 16 AAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAG | |
| 17 CCGAATGATGCTATCAATTTCGATAGTAATGGAAATTTCATTGCTCCAGA | |
| 18 ATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCGATTATGAAAAGTG | |
| 19 AATTGGAATATGGCAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG | |
| 20 ATAAATTCTAGTATGCCATTCCACAACATACACCCTCTCACCGTCGGGGA | |
| 21 ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTCGCGACTGGACTCA | |
| 22 GAAATGCCCCTCAAAGAGAGGGAGGAAGAAAAAAGAGAGGACTATTTGGA | |
| 23 GCCATAGCAGGGTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG | |
| 24 GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA | |
| 25 AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG | |
| 26 ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA | |
| 27 TAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGAT | |
| 28 TCCTAGATGTCTGGACTTATAACGCTGAACTTCTGGTTCTCATGGAAAAT | |
| 29 GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGAAAA | |
| 30 GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT | |
| 31 TCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAAC | |
| 32 GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGA | |
| 33 GGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGT | |
| 34 CAATTTATTCAACAGTGGCGAGTTCCCTAGCATTGGCAATCATGGTAGCT | |
| 35 GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT | |
| 36 >MALLARD_VIETNAM_16_2003 | |
| 37 ATGGAGAAAATAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGA | |
| 38 TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA | |
| 39 CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA | |
| 40 AAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAAT | |
| 41 TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTG | |
| 42 ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAAT | |
| 43 CCAGTCAATGACCTCTGTTACCCAGGGGATTTCAATGAATATGAAGAATT | |
| 44 GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC | |
| 45 CCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGGGTGAGCTCAGCA | |
| 46 TGTCCATACCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTGT | |
| 47 CAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCA | |
| 48 ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG | |
| 49 GCAGAGCAGACAAAGCTCTATCAAAATCCAACCACCTACATTTCCGTTGG | |
| 50 GACATCAACACTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCA | |
| 51 AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA | |
| 52 CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA | |
| 53 ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG | |
| 54 AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG | |
| 55 ATAAACTCTAGTATGCCATTCCACAATATACACCCCCTCACCATCGGGGA | |
| 56 ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCA | |
| 57 GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGATTATTTGGA | |
| 58 GCTATAGCAGGTTTTATAGAGGGAGGATGGCAAGGAATGGTAGATGGTTG | |
| 59 GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACA | |
| 60 AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG | |
| 61 ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA | |
| 62 CAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGT | |
| 63 TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT | |
| 64 GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA | |
| 65 GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT | |
| 66 TCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC | |
| 67 GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGA | |
| 68 GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGT | |
| 69 CAATTTATTCTACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT | |
| 70 GGTCTATCCTTATGGATGTGCTCCAATGGGTCGTTACAATGCAGA--- | |
| 71 >CHICKEN_CK_160_2005 | |
| 72 ATGGAGAAAATAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGA | |
| 73 TCAGATTTGCATTGGTTACCATGCAAACAACTCAACAGAGCAGGTTGACA | |
| 74 CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA | |
| 75 AAGACACACAACGGGAAGCTCTGTGATCTAGATGGAGTGAAGCCTCTAAT | |
| 76 TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTTGGAAACCCAATGTGTG | |
| 77 ATGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAAT | |
| 78 CCAGCCAATGACCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAATT | |
| 79 GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC | |
| 80 CCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGAGTGAGCTCAGCA | |
| 81 TGTCCATATCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT | |
| 82 CAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCA | |
| 83 ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG | |
| 84 GCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTACATTTCCGTTGG | |
| 85 GACATCAACACTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCA | |
| 86 AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA | |
| 87 CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA | |
| 88 ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG | |
| 89 AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG | |
| 90 ATAAACTCTAGTATGCCATTCCACAATATACACCCTCTCACCATCGGGGA | |
| 91 ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGACTCA | |
| 92 GAAATAGCCCTCAAAGAGAGAAAAGAAGAAAAAAGAGAGGATTATTTGGA | |
| 93 GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG | |
| 94 GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACA | |
| 95 AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG | |
| 96 ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA | |
| 97 CAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGT | |
| 98 TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT | |
| 99 GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA | |
| 100 GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT | |
| 101 TCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGGAAC | |
| 102 GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGA | |
| 103 GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGT | |
| 104 CAATTTATTCTACAGTAGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT | |
| 105 GGTCTATCCTTATGGATGTGCTTCAATGGGTCGTTACAATGCAGAATT | |
| 106 >CK_HK_WF157_2003 | |
| 107 ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGA | |
| 108 TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA | |
| 109 CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA | |
| 110 AAGACCCACAACGGGAAGCTCTGCGACCTAGATGGAGTGAAGCCTCTAAT | |
| 111 TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGGAACCCAATGTGTG | |
| 112 ACGAATTCATCAATGTACCGGAATGGTCTTACATAGTGGAGAAGGCCAGT | |
| 113 CCATCCAATGACCTCTGTTACCCAGGGGATTTCAACAATTATGAAGAACT | |
| 114 GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC | |
| 115 CCAAAAGCTCTTGGTCCAATCATGAAGCCTCATCAGGGGTGAGCTCAGCA | |
| 116 TGTCCATACCTGGGAAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT | |
| 117 CAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCA | |
| 118 ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG | |
| 119 GCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG | |
| 120 AACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCA | |
| 121 AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA | |
| 122 CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA | |
| 123 ATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTG | |
| 124 AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG | |
| 125 ATAAACTCTAGTATGCCCTTCCACAACATACACCCTCTCACCATCGGGGA | |
| 126 ATGCCCCAAATATGTGAAATCAAACAGACTAGTCCTTGCGACTGGGCTCA | |
| 127 GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA | |
| 128 GCTATAGCGGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG | |
| 129 GTATGGATACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA | |
| 130 AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG | |
| 131 ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA | |
| 132 TAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGAT | |
| 133 TCCTAGATGTCTGGACTTATAATGCTGAACTTCTAGTTCTCATGGAAAAT | |
| 134 GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA | |
| 135 GGTCCGACTACAGCTTAGGGATAATGCAAAAGAGCTGGGTAACGGTTGTT | |
| 136 TCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC | |
| 137 GGAACGTATGACTACTCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGA | |
| 138 GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGT | |
| 139 CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT | |
| 140 GGTCTATCTTTATGGATGTGCTCCAATGGTTCGTTACAATGT------ | |
| 141 >SWINE_ANHUI_1_2004 | |
| 142 ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAGGTGA | |
| 143 TCAGATTTGCACTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA | |
| 144 CAATAATGGAAAAGAACGTTACTGTTACACATGCTCAAGACATACTGGAA | |
| 145 AAGACACACAACGGGAAGCTCTGCGACCTAGATGGAGTGAAGCCTCTAAT | |
| 146 TTTAAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGGAACCCAATGTGTG | |
| 147 ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAAT | |
| 148 CCAGCCAATGACCTCTGTTACCCAGGGGATTTCAACGACTATGAAGAACT | |
| 149 GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC | |
| 150 CCAAAAGTTCTTGGTCCGATCATGAAGCCTCATCAGGGGTGAGCTCAGCA | |
| 151 TGTCCATACCAGGGAAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT | |
| 152 CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA | |
| 153 ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCACCCTAATGATGCG | |
| 154 GCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG | |
| 155 GACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCA | |
| 156 AAGTAAACGGACAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAA | |
| 157 CCGAATGATGCTATCAATTTCGAGAGTAATGGAAATTTCATTGCTCCAGA | |
| 158 ATATGCATACAAAATTGTCAAGAAAGGGGACTCTGCAATTATGAAAAGTG | |
| 159 AATTGGAATATGGCAACTGCAACACCAAGTGTCAAACTCCAGTGGGGGCG | |
| 160 ATAAATTCTAGCATGCCATTCCACAACATACACCCTCTCACCATCGGGGA | |
| 161 ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGACTCA | |
| 162 GAAATGCCCCTCAAAGAGAGGGAAGAAGAAAAAAGAGAGGACTATTTGGA | |
| 163 GCTATAGCAGGGTTTATAGAGGGAGGATGGCAGGGGATGGTAGATGGTTG | |
| 164 GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA | |
| 165 AAGAATCCACTCAAAAAGCAATAGATGGAGTCACCAATAAGGTCAACTCG | |
| 166 ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA | |
| 167 TAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGAT | |
| 168 TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT | |
| 169 GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA | |
| 170 GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT | |
| 171 TCGAGTTCTATCACAGATGTGATAATGAATGTATGGAAAGTGTAAGAAAC | |
| 172 GGAACGTATGACTACCCGCAGTATTCGGAAGAAGCAAGACTAAACAGAGA | |
| 173 GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGT | |
| 174 CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTGGCT | |
| 175 GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT |