Mercurial > repos > iuc > hyphy_annotate
comparison test-data/fade-out1.json @ 0:be1650bef38c draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
| author | iuc |
|---|---|
| date | Tue, 20 Apr 2021 10:17:07 +0000 |
| parents | |
| children |
comparison
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| -1:000000000000 | 0:be1650bef38c |
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| 1 { | |
| 2 "MLE":{ | |
| 3 "content":{ | |
| 4 "A":{ | |
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| 384 ] | |
| 385 }, | |
| 386 "D":{ | |
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| 576 }, | |
| 577 "E":{ | |
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| 767 }, | |
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| 1150 "H":{ | |
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| 1341 "I":{ | |
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| 1531 }, | |
| 1532 "K":{ | |
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| 1784 [1.018009015334268, 3.987314185459314, 0.9462366522595419, 0.9935865206235256], | |
| 1785 [1.630019337062599, 4.544440107449625, 0.9473524057696497, 1.015839883812072], | |
| 1786 [0.9221735215437065, 4.314832457196292, 0.9475813560963031, 1.020523369353869], | |
| 1787 [1.076228733913891, 15.19323991382157, 0.9878854405716444, 4.603532234063535], | |
| 1788 [1.869359757456768, 4.548643480063953, 0.9473099786062067, 1.014976449466668], | |
| 1789 [0.3510396695955084, 5.273501390735112, 0.9392631837888819, 0.8730266582108971], | |
| 1790 [0.4683549692351834, 4.680698788736254, 0.942384914063441, 0.9233882406422014], | |
| 1791 [0.6673979279481893, 4.913849693012484, 0.9483816167549205, 1.037220179785441], | |
| 1792 [0.4806783117696812, 1.348428347467156, 0.9302636543778353, 0.7530765011973177], | |
| 1793 [0.526784271944534, 5.086856097324162, 0.9487168225747855, 1.044368836713153], | |
| 1794 [0.3974325162372736, 2.121513608793487, 0.9325099421958474, 0.7800202886982909], | |
| 1795 [0.3324487307487672, 5.293524463027779, 0.9377442235279531, 0.8503485426791061], | |
| 1796 [1.011034355220712, 1.261053223141087, 0.9377977905767765, 0.8511294589710634], | |
| 1797 [3.594934250231269, 4.978299807061322, 0.9465630367756792, 0.9999999999999869], | |
| 1798 [0.7271988716408258, 0.9889887363029946, 0.933411248891388, 0.7913423149068889], | |
| 1799 [1.128875169442267, 4.674604375962374, 0.947724428229983, 1.023470929727118], | |
| 1800 [0.6993182345535317, 6.035253529134496, 0.9508430104093476, 1.091982725491858], | |
| 1801 [3.898484723167756, 3.546603232516683, 0.9446049484285004, 0.9626567793673469], | |
| 1802 [0.570215400609679, 4.414501583448336, 0.9473904381582681, 1.016615063911685], | |
| 1803 [1.042915445458586, 4.682046998384995, 0.9477587923224464, 1.024181300537115], | |
| 1804 [0.9215799221434046, 4.075346313285413, 0.946604406418965, 1.000818515326873], | |
| 1805 [2.109137994048569, 8.801350130301925, 0.962202745401371, 1.437138301405174], | |
| 1806 [0.6158660941664404, 5.021171674987329, 0.9452712252668325, 0.9750635927043457], | |
| 1807 [0.7209897851929201, 4.877054013250101, 0.948279850236081, 1.035068225825869], | |
| 1808 [0.3745744295441779, 5.246211037605863, 0.9402969373295993, 0.889120532524788], | |
| 1809 [5.323229098659453, 4.63076439113825, 0.9472690437707996, 1.014144702443996], | |
| 1810 [1.019137933788917, 2.378754001425134, 0.941689885489437, 0.9117089953524214], | |
| 1811 [0.6158660941664404, 5.021171674987329, 0.9452712252668325, 0.9750635927043457], | |
| 1812 [1.040304999251207, 4.582552593797405, 0.9475387656534913, 1.019649029856492], | |
| 1813 [0.823112580640513, 4.773041122048238, 0.9480134394582307, 1.029474603244551], | |
| 1814 [1.116234427077177, 4.581588355345961, 0.9475006398458592, 1.018867548241388], | |
| 1815 [0.4683549692351834, 4.680698788736254, 0.942384914063441, 0.9233882406422014], | |
| 1816 [1.460711256841314, 4.640650773524774, 0.9475998308040704, 1.020903078742117], | |
| 1817 [0.8847674199105034, 3.881956110406182, 0.9461428118940411, 0.991756938364778], | |
| 1818 [1.474738359598277, 4.030403848304066, 0.9461734559628735, 0.9923536966891239], | |
| 1819 [0.4806783117696812, 1.348428347467156, 0.9302636543778353, 0.7530765011973177], | |
| 1820 [0.793134308474535, 4.806100919431636, 0.9481062963120399, 1.031417726905608], | |
| 1821 [0.6879078595426394, 4.90463900243576, 0.9483525275937204, 1.036604195040859], | |
| 1822 [4.744782658843782, 4.284255610039867, 0.9467082345057503, 1.002878393580936], | |
| 1823 [0.6172043644504596, 3.213285208105728, 0.9554978991360744, 1.212108372506975], | |
| 1824 [0.8789761384092039, 3.409825853582111, 0.9449753934767987, 0.9695177902096818], | |
| 1825 [0.7327060362658503, 1.014910512648804, 0.9336081764067766, 0.7938569974243777], | |
| 1826 [0.9988722363542699, 4.693030284869469, 0.9477869505074845, 1.024764080511291], | |
| 1827 [0.5465006822499606, 8.920269507197101, 0.9689213661277081, 1.760025017049481], | |
| 1828 [0.9062313800586461, 1.733081678959528, 0.9380114779698798, 0.8542580877532563], | |
| 1829 [0.4461533124433988, 5.183100385927043, 0.9488935151488381, 1.0481747561372], | |
| 1830 [0.8602971535473026, 4.743729967908412, 0.9479345393221196, 1.027828984672408], | |
| 1831 [0.5974625701791519, 5.355196147456175, 0.9493118446285301, 1.057291257497039], | |
| 1832 [0.2766483822277366, 5.35161770176359, 0.9344562773054735, 0.804859565128263], | |
| 1833 [1.857788523553958, 4.599485801615609, 0.9475018530878199, 1.018892399115323], | |
| 1834 [0.3884895800278157, 5.232493389258639, 0.9409273716798918, 0.8992118807331206], | |
| 1835 [1.853392407095795, 4.594023782924671, 0.9474167655726058, 1.017152328795495], | |
| 1836 [0.3967750108418744, 2.119357068311833, 0.9324738971403984, 0.7795737835814369], | |
| 1837 [1.112702946651881, 2.885354184292008, 0.9436145274590791, 0.944755920867613], | |
| 1838 [0.6063625406584043, 5.030177782318238, 0.945226639317594, 0.9742239294808542], | |
| 1839 [1.192616685308739, 4.153969414313178, 0.9464206873975772, 0.9971932166259065], | |
| 1840 [0.9874024301563478, 4.950446146392183, 0.9461037373382979, 0.9909969902335249], | |
| 1841 [2.662170798408182, 2.097744277661413, 0.9397540979759207, 0.8806005357266822], | |
| 1842 [0.5610237323545627, 5.036699362759165, 0.9486180861605851, 1.042253476278344], | |
| 1843 [1.106042977326902, 4.658945613900423, 0.9476836208350964, 1.022628575754094], | |
| 1844 [0.2992686920505683, 5.329073982857186, 0.9361218892411621, 0.8273181757251753], | |
| 1845 [0.6957289574733035, 1.347896416214744, 0.936738116483167, 0.8359269028231698], | |
| 1846 [0.6684712486330336, 4.905864476442301, 0.9483638299874041, 1.036843449237625], | |
| 1847 [0.9874024301563478, 4.950446146392183, 0.9461037373382979, 0.9909969902335249], | |
| 1848 [0.7658872862017477, 4.829407699584593, 0.9481667163199211, 1.032685815556094], | |
| 1849 [0.3745744295441779, 5.246211037605863, 0.9402969373295993, 0.889120532524788], | |
| 1850 [2.809549763405183, 3.050934224980371, 0.9425596314774587, 0.9263686436282577], | |
| 1851 [1.781601539520804, 4.527211911289008, 0.9472947919799756, 1.014667724589882], | |
| 1852 [0.4683549692351834, 4.680698788736254, 0.942384914063441, 0.9233882406422014], | |
| 1853 [0.495164395032605, 5.121227868881578, 0.948784811738505, 1.045830200121164], | |
| 1854 [0.5897077492064501, 4.994709179803211, 0.9485275806978174, 1.04032158730492], | |
| 1855 [1.009193223066061, 2.078869326985083, 0.9404083954005394, 0.8908891017376612], | |
| 1856 [0.4814618857456329, 5.139673328377968, 0.9488201532903983, 1.046591367364175], | |
| 1857 [0.4806783117696812, 1.348428347467156, 0.9302636543778353, 0.7530765011973177], | |
| 1858 [0.7660916510946622, 4.852320705871243, 0.9482127946771916, 1.033654891958417], | |
| 1859 [0.4806783117696812, 1.348428347467156, 0.9302636543778353, 0.7530765011973177], | |
| 1860 [0.9598693139915286, 3.237555318348448, 0.9441309715658748, 0.9540109376557802], | |
| 1861 [1.047406929016851, 2.383154787292376, 0.9400765633662934, 0.8856430961878111], | |
| 1862 [0.7811332489841571, 4.696099122800018, 0.9478936200390558, 1.026977494525587], | |
| 1863 [2.709492407932091, 3.717621198616648, 0.9455599568313834, 0.9805344111973208], | |
| 1864 [3.047039140343488, 4.608145593146393, 0.9474348583243518, 1.017521860509917], | |
| 1865 [1.290700280873957, 9.54572882593588, 0.9702226814553423, 1.839407972984919], | |
| 1866 [2.509179850660672, 5.373942133433619, 0.9582360514879859, 1.295278577458708], | |
| 1867 [1.063901048033218, 4.674690733751121, 0.9477351731467829, 1.02369294710936], | |
| 1868 [2.417868325445236, 4.59549424286351, 0.9474612208528058, 1.018060752183956], | |
| 1869 [4.913788985272692, 3.467629377588986, 0.942681406176089, 0.9284566727271125], | |
| 1870 [1.429007854908218, 3.614301219742001, 0.9452145077346803, 0.9739956984234311], | |
| 1871 [0.836698475961197, 4.869344224571774, 0.9482031356339117, 1.033451609269997], | |
| 1872 [0.5262152299765583, 5.088346633645926, 0.948714794505043, 1.044325304766487], | |
| 1873 [1.960793333763621, 5.71912057917563, 0.9503758999093366, 1.08117252035229], | |
| 1874 [0.7732097631693891, 1.584076448708799, 0.9390622317690227, 0.869961548410347], | |
| 1875 [0.9195650708950849, 5.044317773399662, 0.9485827221964971, 1.041497803439468], | |
| 1876 [1.381708080244398, 3.476048906177453, 0.9450991204886682, 0.9718299641664154], | |
| 1877 [0.856134197057535, 4.75804554758373, 0.9479690151177588, 1.028547431719251], | |
| 1878 [1.328378493092375, 3.33816654990299, 0.9443995340385112, 0.9588917038603108], | |
| 1879 [1.71386530290558, 3.849657912275591, 0.9457094506316561, 0.9833898490558997], | |
| 1880 [0.688038154834706, 4.899218010047888, 0.9483402582550097, 1.036344590621631], | |
| 1881 [1.167653512528822, 4.613153812098028, 0.9475638416335188, 1.020163642879384], | |
| 1882 [0.929044347689485, 1.712413129970971, 0.9388116146788484, 0.8661671111707], | |
| 1883 [3.928647484965764, 4.22671622622723, 0.9462571329594913, 0.9939866771352854], | |
| 1884 [0.9378522946406753, 3.779390287753592, 0.9457796078117342, 0.9847353297231051], | |
| 1885 [4.213146963569278, 6.505052973373631, 0.9524994128555425, 1.132030080261438], | |
| 1886 [0.6564982400755376, 0.8830099001810239, 0.9326498757152273, 0.7817582327188448], | |
| 1887 [0.5480427573431782, 5.064565051462152, 0.9486676226128975, 1.043313743837275], | |
| 1888 [0.9874024301563478, 4.950446146392183, 0.9461037373382979, 0.9909969902335249], | |
| 1889 [0.915423961533828, 4.715052718414841, 0.94785703090977, 1.026217242398191], | |
| 1890 [0.3599690382446046, 5.263283051514461, 0.9397199297273854, 0.8800693900086873], | |
| 1891 [6.846506780752565, 4.172028093179637, 0.9459770745276649, 0.9885411246124821], | |
| 1892 [0.3510396695955084, 5.273501390735112, 0.9392631837888819, 0.8730266582108971], | |
| 1893 [2.535071008949212, 3.555464988015356, 0.9449857783361603, 0.9697114595749092], | |
| 1894 [0.6025120210968949, 4.968900433897946, 0.948471794582736, 1.039134182648084], | |
| 1895 [0.4832693567973369, 5.1129258332346, 0.9487673609117612, 1.045454740935548], | |
| 1896 [1.371528617500322, 4.6171648000831, 0.9475528556457523, 1.019938126221752], | |
| 1897 [0.6076276361479446, 4.982930012370001, 0.9485517031438629, 1.040835829830636], | |
| 1898 [0.6666015318274037, 3.927601784630151, 0.9461694441223355, 0.9922755320135657], | |
| 1899 [1.131605370904652, 4.630644791967605, 0.9476401812238463, 1.021733329845507], | |
| 1900 [1.034003395584375, 4.421573918310028, 0.9471808655051942, 1.012357404922071], | |
| 1901 [0.7851536508405906, 4.825849766907228, 0.9481540373233673, 1.032419465098889], | |
| 1902 [3.233252354267688, 3.722746249019892, 0.9450444360182146, 0.9708067530067481], | |
| 1903 [0.8631584981646886, 1.751514361445709, 0.9396507461491469, 0.87899577247919], | |
| 1904 [1.3138650589674, 4.593814388489005, 0.9474896539697347, 1.018642576466122], | |
| 1905 [0.9874024301563478, 4.950446146392183, 0.9461037373382979, 0.9909969902335249], | |
| 1906 [0.9389062657947818, 4.71394749250261, 0.9478368936632424, 1.025799283945789], | |
| 1907 [0.6332554271500554, 4.882149770507418, 0.9483443671398368, 1.036431515937792], | |
| 1908 [0.6965304744950663, 4.898419194187772, 0.9483351930487475, 1.036237452920916], | |
| 1909 [0.4683549692351834, 4.680698788736254, 0.942384914063441, 0.9233882406422014], | |
| 1910 [0.4806783117696812, 1.348428347467156, 0.9302636543778353, 0.7530765011973177], | |
| 1911 [0.7793672805674204, 4.787831141996395, 0.9480624914841251, 1.030500200806067] | |
| 1912 ] | |
| 1913 }, | |
| 1914 "M":{ | |
| 1915 "0": [ | |
| 1916 [11.12089148941739, 4.143408832044464, 0.9457653941884109, 0.9876159201486523], | |
| 1917 [1.056740916371472, 4.697466414277313, 0.9455811663390765, 0.9840807467893946], | |
| 1918 [1.45027528032305, 4.653773305076442, 0.9456320515081025, 0.9850547944267006], | |
| 1919 [1.632371493363489, 4.594239323176211, 0.9474694947403214, 1.021491622016719], | |
| 1920 [1.232114584038702, 3.928018554131193, 0.9455472732352994, 0.9834329726132869], | |
| 1921 [4.188756953953877, 4.367428082895338, 0.946432907777461, 1.000628598714736], | |
| 1922 [14.80469314176305, 8.266802561021329, 0.953467730194082, 1.160467313907541], | |
| 1923 [1.206142865652315, 4.740589478826124, 0.9479805115386509, 1.032082663580494], | |
| 1924 [0.9997391709369632, 3.995504563637942, 0.9462966185332959, 0.99794546059383], | |
| 1925 [0.9919701754065146, 4.396097971593291, 0.9471491816824311, 1.014957420858011], | |
| 1926 [0.460891201341427, 3.111047565190542, 0.9385055203589782, 0.864334506647766], | |
| 1927 [0.903526284748957, 4.267834305682885, 0.9469478366727185, 1.01089048608495], | |
| 1928 [0.7379252351670703, 2.421050807990321, 0.9425853023190387, 0.9297768573626323], | |
| 1929 [0.8959277623945635, 3.018934262628716, 0.9437670236817639, 0.9505060355446658], | |
| 1930 [0.7065026187282928, 3.23822536567898, 0.9448077674763949, 0.9694973904086187], | |
| 1931 [0.6037992117999957, 4.365127533973584, 0.9473301554601188, 1.018639414637313], | |
| 1932 [0.6424292402420305, 3.699581154664379, 0.9452854995329421, 0.9784569184882379], | |
| 1933 [0.7294545326395003, 4.796164563121208, 0.9481590135916497, 1.035831401098195], | |
| 1934 [0.4897252793147067, 3.000689980404647, 0.9388361152601244, 0.8693124059827875], | |
| 1935 [0.5827438681160237, 4.987010106655451, 0.9485653158342926, 1.044461207173264], | |
| 1936 [0.4016372609279709, 3.210246109200792, 0.936775099495381, 0.8391282352383457], | |
| 1937 [0.3891338210751467, 5.246947438335837, 0.9410514548067123, 0.9041103270398781], | |
| 1938 [2.175131581300846, 3.845213594110762, 0.9450472534483991, 0.9739693087586228], | |
| 1939 [0.92494235937555, 4.338831895779922, 0.9470614754492294, 1.013182054192166], | |
| 1940 [0.6596383147968479, 4.869891372620134, 0.9483574903395343, 1.040030056096358], | |
| 1941 [0.5896001616611386, 0.7306768375053631, 0.931577955900614, 0.7710886483247434], | |
| 1942 [0.8015130885981691, 4.164190231573866, 0.946843048120952, 1.008786068987851], | |
| 1943 [0.7736664292649782, 4.609038895864282, 0.9476088328906688, 1.024358977516337], | |
| 1944 [1.414904917402769, 4.875648471572473, 0.9476086564896694, 1.024355337824762], | |
| 1945 [0.8042007115138321, 2.768661107882043, 0.9436447725576627, 0.9483212503975447], | |
| 1946 [0.7520911052031173, 4.506646110209594, 0.9475485800291122, 1.023117200820653], | |
| 1947 [0.7124239744648641, 3.609373979746267, 0.9456793810562887, 0.9859624181819162], | |
| 1948 [0.6103073219807762, 2.710828655162033, 0.9434899603241017, 0.9455681210976421], | |
| 1949 [1.025904160701012, 3.7838609111942, 0.9458432868413275, 0.989117847271004], | |
| 1950 [0.6048591264310915, 4.999536858980709, 0.9452102163668988, 0.9770346650178053], | |
| 1951 [1.291293311795129, 2.565198476526078, 0.9427489090449115, 0.9325957300087788], | |
| 1952 [0.6121329515755007, 2.011041760056481, 0.9402513897409885, 0.8912454523886248], | |
| 1953 [1.180219368618043, 4.889398981184226, 0.946016884890265, 0.9924807611859802], | |
| 1954 [1.105454513598039, 4.890626853490008, 0.9459951977362014, 0.9920594593096063], | |
| 1955 [1.605413857897039, 2.939206936718294, 0.9433222475272992, 0.9426025446770783], | |
| 1956 [1.293878631192419, 3.971462634670916, 0.9443578875537566, 0.9612008660695848], | |
| 1957 [0.9884548052730145, 2.95089925072461, 0.9437110951800234, 0.9495053434551489], | |
| 1958 [0.5986741279543244, 16.31252560522164, 0.9748423963984914, 2.194554091209314], | |
| 1959 [0.7883494484476586, 2.442313169511699, 0.9427973874647455, 0.9334340889015836], | |
| 1960 [0.3606858017902954, 5.283306272982982, 0.9398590567207423, 0.8850619010776035], | |
| 1961 [1.082484408515005, 3.518499698102375, 0.9440467322711303, 0.9555406988066132], | |
| 1962 [0.7189636065011923, 4.830475003829075, 0.9481083539609163, 1.034764872593254], | |
| 1963 [0.7089798693324995, 1.787550141705444, 0.9388855498380224, 0.8700613907948836], | |
| 1964 [0.8928681193634391, 7.719192553702568, 0.9562806678635116, 1.238776643030965], | |
| 1965 [1.91491856016437, 3.591378903133635, 0.9437515876984222, 0.9502296507712116], | |
| 1966 [1.518644327658945, 7.098739351534149, 0.9713807869639863, 1.922263735334442], | |
| 1967 [2.565627964363285, 4.347255542248531, 0.9532757087115202, 1.15546542537587], | |
| 1968 [0.9830387823664467, 5.359534534868056, 0.9493057774951067, 1.060544285747459], | |
| 1969 [0.7648264763794788, 3.171203875735396, 0.9443605547374315, 0.9612496579633081], | |
| 1970 [7.993395478079703, 4.040805907248204, 0.9457270305465383, 0.986877776465911], | |
| 1971 [5.525040253676158, 13.14856060469339, 0.9646678277605314, 1.546281667154188], | |
| 1972 [2.467014480149219, 6.15909859522141, 0.9542597645398716, 1.181542554066135], | |
| 1973 [1.862805646612138, 4.991667936230018, 0.9469444810973467, 1.010822968875406], | |
| 1974 [1.749151399183032, 4.056954912196582, 0.9467575638128177, 1.007075464672394], | |
| 1975 [1.027468687238526, 4.677210305710327, 0.9476939066320149, 1.026117169621167], | |
| 1976 [1.364512927085234, 6.728242479888183, 0.9607143695721333, 1.384974287872262], | |
| 1977 [0.9285869893975317, 0.8529698379842841, 0.92357913285826, 0.6844524804439922], | |
| 1978 [1.919503172586934, 2.100639572147981, 0.9406698052530856, 0.8979302050977519], | |
| 1979 [1.708524541398916, 3.343596525186294, 0.9499000915823059, 1.073796906709932], | |
| 1980 [0.351736659376683, 5.293336788811861, 0.9394016657262749, 0.8779540578781505], | |
| 1981 [0.460891201341427, 3.111047565190542, 0.9385055203589782, 0.864334506647766], | |
| 1982 [0.6667717946817246, 4.893763142017518, 0.9484067419256615, 1.041076946162406], | |
| 1983 [0.4897252793147067, 3.000689980404647, 0.9388361152601244, 0.8693124059827875], | |
| 1984 [0.5178176253295015, 1.88921095940703, 0.9393570794111731, 0.8772669230898767], | |
| 1985 [0.4022964728231313, 3.212013747796585, 0.9368052890174339, 0.8395561610686151], | |
| 1986 [0.321650341035935, 2.369009391488082, 0.9280744744836993, 0.7307703790540948], | |
| 1987 [1.00034417247337, 2.390886247295616, 0.942368674814798, 0.926069085034263], | |
| 1988 [3.576480160390781, 4.912463418562362, 0.9464010403673108, 0.9999999999999825], | |
| 1989 [0.6304491791341287, 10.60195246158876, 0.9721853938458079, 1.979508304542972], | |
| 1990 [0.9634894197943674, 3.701269164336891, 0.9607653949851229, 1.386849129846004], | |
| 1991 [0.6977249906525677, 9.224982864215468, 0.9566357269905871, 1.24938324430541], | |
| 1992 [3.939818549048507, 3.799963013305871, 0.9450905313546948, 0.9747815980889891], | |
| 1993 [0.5709587856636735, 4.596838702365027, 0.9478070980889466, 1.028465347930432], | |
| 1994 [1.039505678863528, 2.630181065498647, 0.9430472466455497, 0.9377776493900509], | |
| 1995 [0.9097093831078803, 2.177085547731798, 0.9417303648135809, 0.9153041380556556], | |
| 1996 [2.526679237746549, 5.604425938489465, 0.9490601002908647, 1.055156262511035], | |
| 1997 [0.6143822341889521, 4.99144829349619, 0.9452553661312254, 0.9778871671968672], | |
| 1998 [0.7109050460931223, 2.285113659581308, 0.9401538518211494, 0.8897005870522886], | |
| 1999 [0.3751626675457733, 5.259283661692849, 0.9404152463403344, 0.8938520988503982], | |
| 2000 [5.455700586348224, 3.627801977783612, 0.9430731452855284, 0.9382300531395277], | |
| 2001 [1.016259264608087, 3.035959574613738, 0.9440777559739074, 0.9561022181697556], | |
| 2002 [0.6143822341889521, 4.99144829349619, 0.9452553661312254, 0.9778871671968672], | |
| 2003 [1.032908633075195, 4.281093104759017, 0.9468420882152287, 1.008766830020827], | |
| 2004 [0.8199237165649182, 4.59487117092029, 0.9479767425824605, 1.032003788716895], | |
| 2005 [1.101718288847909, 4.418029065543203, 0.9465682873948348, 1.003307380063987], | |
| 2006 [0.460891201341427, 3.111047565190542, 0.9385055203589782, 0.864334506647766], | |
| 2007 [1.276187562389319, 3.408382441768387, 0.9535701245269068, 1.163151454840884], | |
| 2008 [0.8829765375508152, 4.193342038398979, 0.9467687445837998, 1.00729888787612], | |
| 2009 [1.432282172713598, 4.730843363181782, 0.9476999050738113, 1.026241353390664], | |
| 2010 [0.4897252793147067, 3.000689980404647, 0.9388361152601244, 0.8693124059827875], | |
| 2011 [0.7876822616008416, 2.341753235131878, 0.9424142223282147, 0.9268463551695403], | |
| 2012 [0.6789308236852126, 2.055976973212894, 0.9393904630979548, 0.8777813152884754], | |
| 2013 [5.035952976182944, 3.481205514313594, 0.9448849753518865, 0.9709348471556141], | |
| 2014 [0.685828931856048, 4.19008360097909, 0.9469306580559864, 1.010544926820485], | |
| 2015 [0.8773580655346431, 3.625328475412289, 0.9454657716851658, 0.9818785889769074], | |
| 2016 [0.7404773516223278, 2.354089803868313, 0.9423404166263065, 0.9255874751819483], | |
| 2017 [0.9860262100430436, 2.392371964339527, 0.9415454025965623, 0.9122287267924964], | |
| 2018 [0.6314365928467149, 3.545984507473279, 0.9449248429712103, 0.971678680604101], | |
| 2019 [0.9166469986789135, 3.382724153057069, 0.9446677288386036, 0.9669003866967235], | |
| 2020 [0.4390781996591052, 3.023386790938086, 0.9441892779758745, 0.958125887159292], | |
| 2021 [0.8174501673176641, 2.662801467671637, 0.9456733525769783, 0.9858467240555225], | |
| 2022 [0.5949286791473107, 4.855199985365434, 0.9483916052942347, 1.040754989747624], | |
| 2023 [0.2774120146479326, 5.383246375825815, 0.9346295047149334, 0.8097274503225026], | |
| 2024 [1.638938608699536, 6.622181056464417, 0.9517736985782244, 1.117714523222077], | |
| 2025 [0.3891338210751467, 5.246947438335837, 0.9410514548067123, 0.9041103270398781], | |
| 2026 [1.672573472501623, 1.565334460317754, 0.9417368229992319, 0.9154118726584828], | |
| 2027 [0.4016372609279709, 3.210246109200792, 0.936775099495381, 0.8391282352383457], | |
| 2028 [1.10611116994661, 3.204247768703003, 0.9445053002703785, 0.9639045815354055], | |
| 2029 [0.6048591264310915, 4.999536858980709, 0.9452102163668988, 0.9770346650178053], | |
| 2030 [1.183704342600694, 3.747025957429154, 0.9457922093994382, 0.9881324841951163], | |
| 2031 [0.9796980226888625, 4.89065560818871, 0.9459668952224912, 0.9915101539239576], | |
| 2032 [2.650957215935254, 2.983447339818136, 0.9432093403624113, 0.9406159323773107], | |
| 2033 [0.5609084500251574, 5.022151804998466, 0.9486407491224464, 1.046078428396997], | |
| 2034 [1.094502737260034, 3.607917562747081, 0.9457655872763142, 0.9876196379380793], | |
| 2035 [0.3000065933906724, 5.356426420563507, 0.936281938583415, 0.8321952689371248], | |
| 2036 [0.7005007469051636, 2.864662754206939, 0.9438721642857091, 0.952392646063643], | |
| 2037 [0.6676721537624958, 4.854491177020392, 0.9482918367089511, 1.038637625854309], | |
| 2038 [0.9796980226888625, 4.89065560818871, 0.9459668952224912, 0.9915101539239576], | |
| 2039 [0.7523669393973026, 3.696972087992259, 0.9447611318424926, 0.968631074474544], | |
| 2040 [0.3751626675457733, 5.259283661692849, 0.9404152463403344, 0.8938520988503982], | |
| 2041 [2.578355803805064, 1.194263087887754, 0.9358261860716989, 0.8258829371672378], | |
| 2042 [1.758575626961126, 3.479653608348491, 0.9439598778397863, 0.9539719673543295], | |
| 2043 [0.460891201341427, 3.111047565190542, 0.9385055203589782, 0.864334506647766], | |
| 2044 [0.4953459056315128, 5.121692978964261, 0.9488347404447115, 1.050259326587479], | |
| 2045 [0.5894218527649459, 4.976751327281332, 0.9485422551688979, 1.043967753758321], | |
| 2046 [1.014626712459672, 4.590005220246177, 0.9475074907258697, 1.022272008885547], | |
| 2047 [0.471291117065872, 3.719808931253234, 0.9448190962983778, 0.9697080586807237], | |
| 2048 [0.4897252793147067, 3.000689980404647, 0.9388361152601244, 0.8693124059827875], | |
| 2049 [0.7591559603606866, 1.656114653018429, 0.9380157365973468, 0.8570572455368082], | |
| 2050 [0.4897252793147067, 3.000689980404647, 0.9388361152601244, 0.8693124059827875], | |
| 2051 [0.9695853293652987, 4.690857359257484, 0.9477491291230797, 1.027261499734253], | |
| 2052 [1.04484829371877, 2.924620741737275, 0.9439055335883247, 0.9529928930164673], | |
| 2053 [0.7769983305259213, 4.301127410735666, 0.9470588660370567, 1.013129324071796], | |
| 2054 [2.05828637968008, 12.90071451165223, 0.9626475459275499, 1.459584754893164], | |
| 2055 [2.88511468235225, 3.504067458286539, 0.9446431898021984, 0.9664466654650646], | |
| 2056 [1.352375962906894, 7.678002382841544, 0.959795738618879, 1.352034832721225], | |
| 2057 [3.080044657910243, 2.051589617170126, 0.939695162566787, 0.8825025950049379], | |
| 2058 [1.049783778138455, 1.975955024189177, 0.939623994793136, 0.8813955940246487], | |
| 2059 [2.418417455208109, 3.924188697111596, 0.9452688929133464, 0.9781428490216675], | |
| 2060 [5.039928724679458, 4.469627736498372, 0.9470705976642327, 1.013366433691771], | |
| 2061 [1.409004194651489, 4.290685627565372, 0.9467239625353101, 1.006404581180239], | |
| 2062 [0.8366190619429748, 5.666239839055454, 0.9495127270579462, 1.065123651001685], | |
| 2063 [0.5175805698015677, 1.936770294303173, 0.9394595090766095, 0.8788470095730123], | |
| 2064 [1.931168009576305, 4.061329148470358, 0.9460932054032762, 0.9939660844432788], | |
| 2065 [0.7296783520450687, 2.145908633443113, 0.9489778711446172, 1.053364459461665], | |
| 2066 [0.9119722666273283, 5.250772435923531, 0.9490840773224446, 1.055679820586234], | |
| 2067 [1.376683280292992, 3.6394553761445, 0.9453225643053325, 0.9791585868772232], | |
| 2068 [0.8487899503474103, 2.049803381643031, 0.9405187903430311, 0.8955066917648095], | |
| 2069 [1.336999058600456, 4.543018278529006, 0.9472512467358681, 1.017030874370483], | |
| 2070 [1.697946232145576, 4.313609153680856, 0.9467795668440793, 1.007515236437644], | |
| 2071 [0.6871048148905975, 4.852781198910064, 0.9483232560504529, 1.039303548794853], | |
| 2072 [1.158164105842716, 3.089627394431934, 0.943396776077179, 0.9439182239537223], | |
| 2073 [0.9338108444118562, 3.259915466624444, 0.9446447646741691, 0.9664757724114678], | |
| 2074 [3.831609224486358, 5.068994315188315, 0.948260120206742, 1.037966224968373], | |
| 2075 [0.935481529227373, 4.313029260777377, 0.9472162590958839, 1.016319196544982], | |
| 2076 [3.938682283132802, 6.862828426591634, 0.9527096124116766, 1.140955810976044], | |
| 2077 [0.6741755540158086, 4.883986803198109, 0.9483299245497873, 1.039444989699576], | |
| 2078 [0.5383793673105136, 1.820031062764831, 0.9389016968764942, 0.8703062976679787], | |
| 2079 [0.9796980226888625, 4.89065560818871, 0.9459668952224912, 0.9915101539239576], | |
| 2080 [0.9022446542353973, 5.827006832944823, 0.9497607402631704, 1.070661368686443], | |
| 2081 [0.3606858017902954, 5.283306272982982, 0.9398590567207423, 0.8850619010776035], | |
| 2082 [6.44714938969965, 4.307796982655922, 0.9467038760926768, 1.006003939029065], | |
| 2083 [0.351736659376683, 5.293336788811861, 0.9394016657262749, 0.8779540578781505], | |
| 2084 [2.413533238067975, 2.7079510317774, 0.9422876624564365, 0.92468963760186], | |
| 2085 [0.6020415221983734, 4.946262502318324, 0.9484765412540902, 1.042564026501082], | |
| 2086 [0.4835337166786202, 5.116134994954034, 0.9488263440493433, 1.050077711299028], | |
| 2087 [1.334057511225004, 2.828028637232701, 0.9412633137334544, 0.9075756633243416], | |
| 2088 [0.5994038981468285, 3.130184693557817, 0.9439896634356039, 0.9545093952279253], | |
| 2089 [0.6666080947800082, 4.323025646632656, 0.9473284086422151, 1.018603753900751], | |
| 2090 [1.113033258329655, 5.531254133073857, 0.9488911516134162, 1.051481055836949], | |
| 2091 [0.9901969362501248, 0.5245629146595605, 0.9163346461533104, 0.6202826107659195], | |
| 2092 [0.7792272499891831, 3.507152331121849, 0.9455850624097677, 0.9841552612589731], | |
| 2093 [3.351379148702724, 2.758042561052818, 0.9390964892517576, 0.8732710036353053], | |
| 2094 [0.8613411595356002, 2.650049123061414, 0.9432379364406509, 0.9411183357414589], | |
| 2095 [1.304995294599584, 4.477976496006098, 0.9471138354338071, 1.014241226837533], | |
| 2096 [0.9796980226888625, 4.89065560818871, 0.9459668952224912, 0.9915101539239576], | |
| 2097 [0.9344932433148566, 4.595001674935014, 0.9475772852523516, 1.023708442881752], | |
| 2098 [0.626666057530944, 2.89483669139565, 0.9437426506907153, 0.9500697009534669], | |
| 2099 [0.6872437438551455, 2.000298526193534, 0.9392330656364929, 0.8753610075921061], | |
| 2100 [0.460891201341427, 3.111047565190542, 0.9385055203589782, 0.864334506647766], | |
| 2101 [0.4897252793147067, 3.000689980404647, 0.9388361152601244, 0.8693124059827875], | |
| 2102 [0.7773082709004604, 4.719627465347147, 0.9479568036581688, 1.031586706789682] | |
| 2103 ] | |
| 2104 }, | |
| 2105 "N":{ | |
| 2106 "0": [ | |
| 2107 [11.06585915377673, 3.702083105940501, 0.9442829432384389, 0.9653536559818169], | |
| 2108 [1.035795808747754, 4.381511756976609, 0.9448881421009573, 0.9765799742864805], | |
| 2109 [1.507022680783161, 4.750402048127238, 0.9457972312405222, 0.993914517962996], | |
| 2110 [1.567548258331357, 6.247614600578706, 0.9505505388631135, 1.094929398452548], | |
| 2111 [0.8495479460514767, 7.561793589506101, 0.9736863634845871, 2.10770916519351], | |
| 2112 [3.602446272886334, 4.859350961341151, 0.9518081299948615, 1.12498854125578], | |
| 2113 [17.36135162036972, 5.796236369088786, 0.9497510046511114, 1.076601166477037], | |
| 2114 [1.192425840745261, 3.863030792349715, 0.9456732560473088, 0.9915163913247026], | |
| 2115 [0.999671469279941, 4.364489957127162, 0.9469714881212401, 1.017184961970928], | |
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| 2119 [0.7433912010516663, 4.643396702236749, 0.9477898480936262, 1.034021486597776], | |
| 2120 [0.8863686111486996, 2.115000213825926, 0.938170919986092, 0.8642943028632422], | |
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| 2295 }, | |
| 2296 "P":{ | |
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| 2486 }, | |
| 2487 "Q":{ | |
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| 2677 }, | |
| 2678 "R":{ | |
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| 3059 }, | |
| 3060 "T":{ | |
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| 3250 }, | |
| 3251 "V":{ | |
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| 3442 "W":{ | |
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| 3812 [3.194238175062835, 4.857690727275035, 0.9476012905863258, 1.011465175052791], | |
| 3813 [0.8755801126544244, 5.070276452246964, 0.9485704163897833, 1.031578896894695], | |
| 3814 [1.3153230993828, 4.881809164796187, 0.9479426671633739, 1.018464837502886], | |
| 3815 [0.9922396556240248, 5.196272068305198, 0.9465894291244804, 0.9912434069105044], | |
| 3816 [0.9404773317391132, 5.018308696019317, 0.9484141431498254, 1.028284417156412], | |
| 3817 [0.6341963490047597, 5.215265451237025, 0.9490203473875555, 1.041176922764438], | |
| 3818 [0.6972925318517915, 5.171176742053586, 0.9488914514568129, 1.038410015082761], | |
| 3819 [0.4727948404541072, 5.340150191153969, 0.9438033585435205, 0.9393275036179892], | |
| 3820 [0.5026959673044284, 5.318601143720054, 0.944382387250396, 0.9496890189012613], | |
| 3821 [0.780269492334137, 5.063524190169711, 0.9486043868001306, 1.032297696142919] | |
| 3822 ] | |
| 3823 } | |
| 3824 }, | |
| 3825 "headers": [ | |
| 3826 ["rate", "Mean posterior relative rate at a site"], | |
| 3827 ["bias", "Mean posterior bias parameter at a site"], | |
| 3828 ["Prob[bias>0]", "Posterior probability of substitution bias"], | |
| 3829 ["BayesFactor[bias>0]", "Empiricial Bayes Factor for substitution bias"] | |
| 3830 ] | |
| 3831 }, | |
| 3832 "analysis":{ | |
| 3833 "authors":"Sergei L Kosakovsky Pond", | |
| 3834 "citation":"TBD", | |
| 3835 "contact":"spond@temple.edu", | |
| 3836 "info":"FADE (FUBAR Approach to Directional Evolution) is a fast method to test whether or not a subset of sites in a protein alignment\n evolve towards a particular residue along a subset of branches at accelerated rates compared to reference model.\n FADE uses a random effects model and latent Dirichlet allocation (LDA) - inspired approximation methods to allocate sites to rate classes.", | |
| 3837 "requirements":"A protein alignment and a **rooted** phylogenetic tree (optionally annotated with {})", | |
| 3838 "version":"0.2" | |
| 3839 }, | |
| 3840 "branch attributes":{ | |
| 3841 "0":{ | |
| 3842 "Baboon":{ | |
| 3843 "GTR":0, | |
| 3844 "original name":"Baboon" | |
| 3845 }, | |
| 3846 "Cat":{ | |
| 3847 "GTR":0.5479738108231806, | |
| 3848 "original name":"Cat" | |
| 3849 }, | |
| 3850 "Chimp":{ | |
| 3851 "GTR":0.005354406956230157, | |
| 3852 "original name":"Chimp" | |
| 3853 }, | |
| 3854 "Cow":{ | |
| 3855 "GTR":0.5217716656054335, | |
| 3856 "original name":"Cow" | |
| 3857 }, | |
| 3858 "Horse":{ | |
| 3859 "GTR":0.3639593662085931, | |
| 3860 "original name":"Horse" | |
| 3861 }, | |
| 3862 "Human":{ | |
| 3863 "GTR":0, | |
| 3864 "original name":"Human" | |
| 3865 }, | |
| 3866 "Mouse":{ | |
| 3867 "GTR":0.1538063185305938, | |
| 3868 "original name":"Mouse" | |
| 3869 }, | |
| 3870 "Node1":{ | |
| 3871 "GTR":0.03774939091948738 | |
| 3872 }, | |
| 3873 "Node10":{ | |
| 3874 "GTR":0.04065491268006209 | |
| 3875 }, | |
| 3876 "Node13":{ | |
| 3877 "GTR":0.02528485699542644 | |
| 3878 }, | |
| 3879 "Node2":{ | |
| 3880 "GTR":0.4507260725563764 | |
| 3881 }, | |
| 3882 "Node3":{ | |
| 3883 "GTR":0.06938193079176812 | |
| 3884 }, | |
| 3885 "Node4":{ | |
| 3886 "GTR":0.2509978904573531 | |
| 3887 }, | |
| 3888 "Node9":{ | |
| 3889 "GTR":0.2259272621401927 | |
| 3890 }, | |
| 3891 "Pig":{ | |
| 3892 "GTR":0.3705420381298933, | |
| 3893 "original name":"Pig" | |
| 3894 }, | |
| 3895 "Rat":{ | |
| 3896 "GTR":0.1225892423633173, | |
| 3897 "original name":"Rat" | |
| 3898 }, | |
| 3899 "RhMonkey":{ | |
| 3900 "GTR":0.01051890950002691, | |
| 3901 "original name":"RhMonkey" | |
| 3902 } | |
| 3903 }, | |
| 3904 "attributes":{ | |
| 3905 "GTR":{ | |
| 3906 "attribute type":"branch length", | |
| 3907 "display order":0 | |
| 3908 }, | |
| 3909 "original name":{ | |
| 3910 "attribute type":"node label", | |
| 3911 "display order":-1 | |
| 3912 } | |
| 3913 } | |
| 3914 }, | |
| 3915 "data partitions":{ | |
| 3916 "0":{ | |
| 3917 "coverage": [ | |
| 3918 [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186] | |
| 3919 ], | |
| 3920 "name":"fade.filter.default" | |
| 3921 } | |
| 3922 }, | |
| 3923 "fits":{ | |
| 3924 "GTR":{ | |
| 3925 "AIC-c":5159.231849035938, | |
| 3926 "Equilibrium frequencies": [ | |
| 3927 [0.03384696455734124], | |
| 3928 [0.02379421855942317], | |
| 3929 [0.07116510014564366], | |
| 3930 [0.06063513939424073], | |
| 3931 [0.02621530635466421], | |
| 3932 [0.05270341130752417], | |
| 3933 [0.01804981525062285], | |
| 3934 [0.07446640012659383], | |
| 3935 [0.1050645690919535], | |
| 3936 [0.09185268026948845], | |
| 3937 [0.02464425428149188], | |
| 3938 [0.07033121952127283], | |
| 3939 [0.03713290409005404], | |
| 3940 [0.02697358951223052], | |
| 3941 [0.03378412161537671], | |
| 3942 [0.06364460641047323], | |
| 3943 [0.06994370764087279], | |
| 3944 [0.07542893941378664], | |
| 3945 [0.01961100044001494], | |
| 3946 [0.02071205201693066] | |
| 3947 ], | |
| 3948 "Log Likelihood":-2323.685267583662, | |
| 3949 "Rate Distributions":null, | |
| 3950 "display order":0, | |
| 3951 "estimated parameters":225 | |
| 3952 } | |
| 3953 }, | |
| 3954 "input":{ | |
| 3955 "file name":"/Users/ryanvelazquez/Documents/galaxy_items/tools-iuc/tools/hyphy/./test-data/fade-in1.fa", | |
| 3956 "number of sequences":10, | |
| 3957 "number of sites":187, | |
| 3958 "partition count":1, | |
| 3959 "trees":{ | |
| 3960 "0":"(((((Pig:0.147969,Cow:0.21343)Node4:0.08509899999999999,Horse:0.165787,Cat:0.264806)Node3:0.058611,((RhMonkey:0.002015,Baboon:0.003108)Node10:0.022733,(Human:0.004349,Chimp:0.000799)Node13:0.011873)Node9:0.101856)Node2:0.340802,Rat:0.050958)Node1:0.1,Mouse:0.09795)" | |
| 3961 } | |
| 3962 }, | |
| 3963 "settings":{ | |
| 3964 "bayes factor":100, | |
| 3965 "burn-in":1000000, | |
| 3966 "chain-length":2000000, | |
| 3967 "chains":1, | |
| 3968 "concentration":0.5, | |
| 3969 "grid size":20, | |
| 3970 "method":"Variational-Bayes", | |
| 3971 "samples":100 | |
| 3972 }, | |
| 3973 "site annotations":{ | |
| 3974 "headers":{ | |
| 3975 "Composition":"Amino acid composition of site", | |
| 3976 "Substitutions":"Substitution history on selected branches" | |
| 3977 }, | |
| 3978 "site annotations":{ | |
| 3979 "0": [ | |
| 3980 ["E1,K8", "K->E(1)"], | |
| 3981 ["E9", ""], | |
| 3982 ["I9", ""], | |
| 3983 ["A1,R6,T6", "R->T(1), T->A(1)R(1)"], | |
| 3984 ["D3,E1,K1,N11", "D->N(1), N->E(1)K(1)"], | |
| 3985 ["A7,D1,N5,S3,T1", "N->A(1)D(1)S(2), S->T(1)"], | |
| 3986 ["D1,E3,G1,I5,L7", "E->G(1)I(1), I->D(1)E(1)L(1)"], | |
| 3987 ["E7,I1,T6,V3", "T->E(1)I(1)V(1)"], | |
| 3988 ["I2,T7,V8", "V->I(2)T(1)"], | |
| 3989 ["L1,W16", "W->L(1)"], | |
| 3990 ["G17", ""], | |
| 3991 ["A14,I1,T1,V1", "A->I(1)T(1)V(1)"], | |
| 3992 ["L16,V1", "L->V(1)"], | |
| 3993 ["D3,E1,G13", "G->D(1)E(1)"], | |
| 3994 ["H4,Q12,R1", "H->Q(1), Q->H(1)R(1)"], | |
| 3995 ["D14,G3", "G->D(1)"], | |
| 3996 ["I16,L1", "I->L(1)"], | |
| 3997 ["D3,N13,T1", "N->D(1)T(1)"], | |
| 3998 ["L17", ""], | |
| 3999 ["D14,N3", "N->D(1)"], | |
| 4000 ["I17", ""], | |
| 4001 ["P17", ""], | |
| 4002 ["A1,D4,E1,G1,N3,S7", "D->A(1)E(1)G(1)S(1), N->D(1)"], | |
| 4003 ["F15,L1,S1", "F->L(1)S(1)"], | |
| 4004 ["P2,Q14,S1", "P->S(1), Q->P(1)"], | |
| 4005 ["K2,M13,R1", "K->R(1), M->K(1)"], | |
| 4006 ["G1,H1,S12,T3", "S->G(1)H(1), T->S(1)"], | |
| 4007 ["D15,E1,I1", "D->E(1)I(1)"], | |
| 4008 ["D13,H1,I1,N2", "D->H(1)I(1)N(2)"], | |
| 4009 ["I13,V4", "I->V(2)"], | |
| 4010 ["A1,D15,E1", "D->A(1)E(1)"], | |
| 4011 ["D13,E3,H1", "D->H(1), E->D(1)"], | |
| 4012 ["I14,V3", "V->I(1)"], | |
| 4013 ["H1,K7,Q1,R8", "K->R(1), R->H(1)K(2)Q(1)"], | |
| 4014 ["W17", ""], | |
| 4015 ["E13,N1,Q1,S1,V1", "E->N(1)Q(1)S(1)V(1)"], | |
| 4016 ["K13,R4", "K->R(1), R->K(1)"], | |
| 4017 ["T9", ""], | |
| 4018 ["S9", ""], | |
| 4019 ["D7,G6,N3,R1", "G->D(1)N(1)R(1)"], | |
| 4020 ["E1,G1,K13,S2", "K->E(1), S->G(1)K(1)"], | |
| 4021 ["K10,N3,T4", "K->N(1)T(1), T->K(1)"], | |
| 4022 ["K14,L3", "L->K(1)"], | |
| 4023 ["I13,V4", "I->V(1), V->I(1)"], | |
| 4024 ["A17", ""], | |
| 4025 ["E4,K4,Q7,R2", "E->K(1), K->E(1)Q(1)R(2)"], | |
| 4026 ["F16,I1", "F->I(1)"], | |
| 4027 ["K9,Q1,R7", "K->Q(1)R(1)"], | |
| 4028 ["I1,K12,N1,R3", "K->I(1)N(1), R->K(1)"], | |
| 4029 ["D2,E9,G1,K3,N1,S1", "D->N(1), E->D(1)G(1)S(1), K->E(1)"], | |
| 4030 ["K13,M2,N1,S1", "K->M(2)N(1)S(1)"], | |
| 4031 ["E8,K6,M1,P2", "K->E(2)M(1)P(2)"], | |
| 4032 ["L1,P4,T12", "P->T(1), T->L(1)P(1)"], | |
| 4033 ["F13,H3,K1", "F->H(1)K(1)"], | |
| 4034 ["E3,K4,L3,N2,P1,Q4", "K->E(1), L->Q(1), Q->K(1)N(2)P(1)"], | |
| 4035 ["E11,I1,K3,P1,V1", "E->K(1)P(1)V(1), K->E(1)I(1)"], | |
| 4036 ["D2,E2,K9,M1,S3", "E->D(2)K(2), K->M(1), S->E(1)"], | |
| 4037 ["D10,E5,G1,K1", "E->D(2)G(1)K(1)"], | |
| 4038 ["A4,K2,T11", "T->A(2)K(2)"], | |
| 4039 ["F1,Y16", "Y->F(1)"], | |
| 4040 ["D1,E7,K7,M1,N1", "E->D(1)K(1)M(1)N(1)"], | |
| 4041 ["I1,L7,M3,V6", "V->I(1)L(1)M(1)"], | |
| 4042 ["F8,L8,S1", "L->F(2)S(1)"], | |
| 4043 ["A3,K10,M1,P2,T1", "A->K(1), K->M(1)P(1), P->T(1)"], | |
| 4044 ["N17", ""], | |
| 4045 ["G17", ""], | |
| 4046 ["D1,S2,T14", "S->D(1)T(1)"], | |
| 4047 ["L17", ""], | |
| 4048 ["K16,R1", "K->R(1)"], | |
| 4049 ["I16", ""], | |
| 4050 ["K17", ""], | |
| 4051 ["D1,H12,K1,N2,T1", "H->D(1)T(1), N->H(1)K(1)"], | |
| 4052 ["P1", ""], | |
| 4053 ["L16,M1", "L->M(1)"], | |
| 4054 ["E1,K8,M7,T1", "M->E(1)K(2)T(1)"], | |
| 4055 ["I3,L1,R9,T4", "R->L(1)T(1), T->I(1)"], | |
| 4056 ["D10,E1,H3,I1,N2", "D->E(1)H(1)I(1)N(2)"], | |
| 4057 ["D16,H1", "D->H(1)"], | |
| 4058 ["C1,E5,Q7,S4", "E->C(1)Q(1)S(1), S->E(1)"], | |
| 4059 ["D8,G9", "G->D(2)"], | |
| 4060 ["I5,L1,S4,T7", "I->L(1), S->I(1), T->I(1)S(1)"], | |
| 4061 ["Y17", ""], | |
| 4062 ["E1,K13,N3", "K->E(1), N->K(1)"], | |
| 4063 ["V17", ""], | |
| 4064 ["D1,E1,M1,S10,T3,V1", "S->D(1)E(1)T(1)V(1), T->M(1)S(1)"], | |
| 4065 ["A1,I10,V6", "I->A(1)V(1), V->I(1)"], | |
| 4066 ["Y17", ""], | |
| 4067 ["A1,D13,G2,S1", "D->A(1), G->D(1)S(1)"], | |
| 4068 ["K1,S2,T14", "T->K(1)S(2)"], | |
| 4069 ["D5,K7,N5", "D->N(1), N->D(1)K(1)"], | |
| 4070 ["G17", ""], | |
| 4071 ["K13,M2,T1,V1", "K->V(1), M->K(1)T(1)"], | |
| 4072 ["H1,N13,R2,T1", "N->H(1), R->N(1)T(1)"], | |
| 4073 ["I2,L1,M1,R1,V12", "I->R(1)V(1), V->L(1)M(1)"], | |
| 4074 ["L17", ""], | |
| 4075 ["D2,E14,S1", "E->D(2)S(1)"], | |
| 4076 ["E1,K15,R1", "K->E(1)R(1)"], | |
| 4077 ["A2,D1,I3,K3,T8", "A->D(1)T(1), T->I(1)K(1)"], | |
| 4078 ["F14,L3", "L->F(1)"], | |
| 4079 ["D15,H1,Q1", "D->H(1)Q(1)"], | |
| 4080 ["L16,V1", "L->V(1)"], | |
| 4081 ["K12,P1,R3,S1", "K->P(1)S(1), R->K(1)"], | |
| 4082 ["I16,L1", "I->L(1)"], | |
| 4083 ["L5,Q12", "L->Q(1), Q->L(2)"], | |
| 4084 ["D1,E16", "E->D(1)"], | |
| 4085 ["G1,K1,M7,R8", "M->G(1)K(1)R(2)"], | |
| 4086 ["L1,V16", "V->L(1)"], | |
| 4087 ["S17", ""], | |
| 4088 ["E3,G1,K12,T1", "K->E(1)G(1)T(1)"], | |
| 4089 ["P17", ""], | |
| 4090 ["E2,K9,M3,N2,V1", "E->V(1), K->E(1)N(2), M->K(1)"], | |
| 4091 ["I17", ""], | |
| 4092 ["D1,H2,N1,S12,Y1", "H->S(1)Y(1), S->D(1)N(1)"], | |
| 4093 ["W17", ""], | |
| 4094 ["E3,I1,N1,S5,T7", "E->S(1), S->I(1)N(1)T(1)"], | |
| 4095 ["C17", ""], | |
| 4096 ["A2,I10,P1,S2,T2", "A->T(1), I->A(1)T(1), S->I(1)P(1)"], | |
| 4097 ["D1,N16", "N->D(1)"], | |
| 4098 ["A1,K3,R1,T12", "K->R(1), T->A(1)K(2)"], | |
| 4099 ["T17", ""], | |
| 4100 ["L14,V3", "L->V(1)"], | |
| 4101 ["S1,T15,V1", "T->S(1)V(1)"], | |
| 4102 ["C17", ""], | |
| 4103 ["A1,E14,K2", "E->A(1)K(2)"], | |
| 4104 ["V17", ""], | |
| 4105 ["A1,E1,L3,M7,S1,T4", "L->T(1), T->A(1)E(1)M(1)S(1)"], | |
| 4106 ["E3,K1,N12,Q1", "E->N(1)Q(1), N->E(1)K(1)"], | |
| 4107 ["G17", ""], | |
| 4108 ["S3,T14", "T->S(1)"], | |
| 4109 ["D15,N1", "D->N(1)"], | |
| 4110 ["F3,P13,V1", "F->P(1)V(1), P->F(1)"], | |
| 4111 ["E14,K3", "E->K(1)"], | |
| 4112 ["L17", ""], | |
| 4113 ["K9,N7,Q1", "K->N(1)Q(1)"], | |
| 4114 ["L17", ""], | |
| 4115 ["F1,Y16", "Y->F(1)"], | |
| 4116 ["L4,Q11,V2", "L->V(2), Q->L(1)"], | |
| 4117 ["D8,G3,N6", "D->N(1), G->D(1)"], | |
| 4118 ["E2,G11,K3,T1", "E->G(1)K(1), G->K(1), K->T(1)"], | |
| 4119 ["E1,K7,R1,S1,T7", "T->E(1)K(1)R(1)S(1)"], | |
| 4120 ["H11,L1,M1,R2,S1,T1", "H->L(1)M(1)R(1)S(1), R->T(1)"], | |
| 4121 ["A1,I4,L10,V2", "I->A(1)V(1), L->I(1)V(1)"], | |
| 4122 ["K12,N1,Q1,R3", "K->Q(1)R(1), R->K(1)N(1)"], | |
| 4123 ["E4,K1,P1,Q1,S3", "E->K(1)P(1)Q(1), S->E(1)"], | |
| 4124 ["D1,G2,L12,S1,V1", "G->D(1), L->G(1)S(1)V(1)"], | |
| 4125 ["H1,P3,R2,S11", "P->R(1)S(1), S->H(1)P(1)R(1)"], | |
| 4126 ["G1,Q14,R1,S1", "Q->G(1)R(1)S(1)"], | |
| 4127 ["K10,R7", "K->R(1)"], | |
| 4128 ["F1,L1,N1,T2,V12", "T->N(1)V(1), V->F(1)L(1)"], | |
| 4129 ["I13,M3,S1", "I->S(1), M->I(1)"], | |
| 4130 ["L1,S3,T12,V1", "S->T(1), T->L(1)V(1)"], | |
| 4131 ["H7,W1,Y9", "Y->H(1)W(1)"], | |
| 4132 ["K12,Q3,R1,T1", "K->R(1)T(1), Q->K(1)"], | |
| 4133 ["F1,R1,W15", "W->F(1)R(1)"], | |
| 4134 ["A4,I1,N3,T7", "A->I(1)N(1)T(1)"], | |
| 4135 ["N1,S1,T15", "T->N(1)S(1)"], | |
| 4136 ["K3,N6,R1,S7", "K->R(1), N->K(2)S(1)"], | |
| 4137 ["L11,Q3,W3", "L->Q(1), Q->W(1)"], | |
| 4138 ["I1,K1,N2,R2,S11", "R->N(1)S(1), S->I(1)K(1)N(1)"], | |
| 4139 ["A13,I1,K1,T2", "A->I(1)T(1), T->K(1)"], | |
| 4140 ["K7,L2,P3,S1,T4", "P->T(1), T->K(1)L(2)S(1)"], | |
| 4141 ["F16,V1", "F->V(1)"], | |
| 4142 ["K16,N1", "K->N(1)"], | |
| 4143 ["C17", ""], | |
| 4144 ["E1,K2,T11,V3", "K->E(1)T(1), T->V(1)"], | |
| 4145 ["A17", ""], | |
| 4146 ["E1,G7,I2,N1,S5,V1", "I->S(1)V(1), S->E(1)G(1)N(1)"], | |
| 4147 ["N17", ""], | |
| 4148 ["H1,K10,N2,P1,R2,T1", "K->N(1)T(1), N->H(1), R->K(1)P(1)"], | |
| 4149 ["A1,V16", "V->A(1)"], | |
| 4150 ["D1,S16", "S->D(1)"], | |
| 4151 ["E3,K12,Q1,S1", "E->S(1), K->E(2)Q(1)"], | |
| 4152 ["E15,K1,Q1", "E->K(1)Q(1)"], | |
| 4153 ["I2,S14,V1", "I->V(1), S->I(1)"], | |
| 4154 ["D1,E2,K1,R3,S10", "E->K(1)S(1), S->D(1)R(1)"], | |
| 4155 ["I1,M11,S1,V4", "M->I(1)S(1)V(2)"], | |
| 4156 ["E14,K1,V2", "E->K(1)V(2)"], | |
| 4157 ["I1,M1,P3,T5,V7", "T->P(1), V->I(1)M(1)T(2)"], | |
| 4158 ["A1,I5,V11", "I->A(1), V->I(1)"], | |
| 4159 ["N3,R1,S11,T1,V1", "N->S(1), S->R(1)T(1)V(1)"], | |
| 4160 ["C17", ""], | |
| 4161 ["P14,S1,T2", "P->S(1)T(2)"], | |
| 4162 ["D1,E15,G1", "E->D(1)G(1)"], | |
| 4163 ["E1,K15,Q1", "K->E(1)Q(1)"], | |
| 4164 ["G17", ""], | |
| 4165 ["L17", ""], | |
| 4166 ["D14,P1,S2", "S->D(1)P(1)"] | |
| 4167 ] | |
| 4168 } | |
| 4169 }, | |
| 4170 "tested":{ | |
| 4171 "0":{ | |
| 4172 "Baboon":"test", | |
| 4173 "Cat":"test", | |
| 4174 "Chimp":"test", | |
| 4175 "Cow":"test", | |
| 4176 "Horse":"test", | |
| 4177 "Human":"test", | |
| 4178 "Mouse":"test", | |
| 4179 "Node1":"test", | |
| 4180 "Node10":"test", | |
| 4181 "Node13":"test", | |
| 4182 "Node2":"test", | |
| 4183 "Node3":"test", | |
| 4184 "Node4":"test", | |
| 4185 "Node9":"test", | |
| 4186 "Pig":"test", | |
| 4187 "Rat":"test", | |
| 4188 "RhMonkey":"test" | |
| 4189 } | |
| 4190 }, | |
| 4191 "timers":{ | |
| 4192 "Baseline Fit":{ | |
| 4193 "order":1, | |
| 4194 "timer":88 | |
| 4195 }, | |
| 4196 "Overall":{ | |
| 4197 "order":0, | |
| 4198 "timer":121 | |
| 4199 }, | |
| 4200 "Residue A analysis":{ | |
| 4201 "order":2, | |
| 4202 "timer":2 | |
| 4203 }, | |
| 4204 "Residue C analysis":{ | |
| 4205 "order":3, | |
| 4206 "timer":1 | |
| 4207 }, | |
| 4208 "Residue D analysis":{ | |
| 4209 "order":4, | |
| 4210 "timer":1 | |
| 4211 }, | |
| 4212 "Residue E analysis":{ | |
| 4213 "order":5, | |
| 4214 "timer":1 | |
| 4215 }, | |
| 4216 "Residue F analysis":{ | |
| 4217 "order":6, | |
| 4218 "timer":2 | |
| 4219 }, | |
| 4220 "Residue G analysis":{ | |
| 4221 "order":7, | |
| 4222 "timer":1 | |
| 4223 }, | |
| 4224 "Residue H analysis":{ | |
| 4225 "order":8, | |
| 4226 "timer":2 | |
| 4227 }, | |
| 4228 "Residue I analysis":{ | |
| 4229 "order":9, | |
| 4230 "timer":1 | |
| 4231 }, | |
| 4232 "Residue K analysis":{ | |
| 4233 "order":10, | |
| 4234 "timer":2 | |
| 4235 }, | |
| 4236 "Residue L analysis":{ | |
| 4237 "order":11, | |
| 4238 "timer":1 | |
| 4239 }, | |
| 4240 "Residue M analysis":{ | |
| 4241 "order":12, | |
| 4242 "timer":2 | |
| 4243 }, | |
| 4244 "Residue N analysis":{ | |
| 4245 "order":13, | |
| 4246 "timer":2 | |
| 4247 }, | |
| 4248 "Residue P analysis":{ | |
| 4249 "order":14, | |
| 4250 "timer":1 | |
| 4251 }, | |
| 4252 "Residue Q analysis":{ | |
| 4253 "order":15, | |
| 4254 "timer":2 | |
| 4255 }, | |
| 4256 "Residue R analysis":{ | |
| 4257 "order":16, | |
| 4258 "timer":2 | |
| 4259 }, | |
| 4260 "Residue S analysis":{ | |
| 4261 "order":17, | |
| 4262 "timer":2 | |
| 4263 }, | |
| 4264 "Residue T analysis":{ | |
| 4265 "order":18, | |
| 4266 "timer":2 | |
| 4267 }, | |
| 4268 "Residue V analysis":{ | |
| 4269 "order":19, | |
| 4270 "timer":2 | |
| 4271 }, | |
| 4272 "Residue W analysis":{ | |
| 4273 "order":20, | |
| 4274 "timer":2 | |
| 4275 }, | |
| 4276 "Residue Y analysis":{ | |
| 4277 "order":21, | |
| 4278 "timer":2 | |
| 4279 } | |
| 4280 } | |
| 4281 } |