
C4 Alignment:
------------
         Query: NZ874 single_hit
        Target: NZ874 Joins between unique SPAdes contigs are separated by 10 "N" characters
         Model: protein2genome:local
     Raw score: 2505
   Query range: 0 -> 505
  Target range: 3 -> 1739

    1 : ValSerSerGlnGlyTyrGlyThrPheLysLeuSerSerPheSerGlyArgGluLeuLysGl :   21
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        ValSerSerGlnGlyTyrGlyThrPheLysLeuSerSerPheSerGlyArgGluLeuLysGl
    4 : GTTTCATCGCAGGGCTATGGGACGTTCAAGCTCAGTTCTTTTTCGGGGAGAGAGCTGAAGGA :   64

   22 : uLeuLysLysArgLeuArgSerGluLeuGluGlnValArgAlaLeuIleSerArgIleGluS :   42
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        uLeuLysLysArgLeuArgSerGluLeuGluGlnValArgAlaLeuIleSerArgIleGluS
   65 : GCTCAAGAAGCGTCTGAGGTCGGAGCTGGAGCAGGTTCGGGCTTTGATAAGCCGAATTGAGT :  127

   43 : erArgSerGluLysArgAsnProLysAlaIleGlnLysAsnAsnProGluSerAspPheGly :   62
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        erArgSerGluLysArgAsnProLysAlaIleGlnLysAsnAsnProGluSerAspPheGly
  128 : CGAGATCTGAGAAGAGAAACCCTAAAGCCATCCAGAAGAACAATCCGGAGTCGGACTTTGGG :  187

   63 : LysThrLysLysLysAspValMetSerValValAlaValGluAsnLysAlaValAlaGlyTh :   83
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        LysThrLysLysLysAspValMetSerValValAlaValGluAsnLysAlaValAlaGlyTh
  188 : AAGACCAAAAAGAAGGATGTCATGAGCGTGGTTGCGGTGGAGAACAAGGCAGTCGCTGGCAC :  250

   84 : rLysArgIleAsnProPheGlySerValAlaProValValLysArgAlaAlaIleAspProT :  104
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        rLysArgIleAsnProPheGlySerValAlaProValValLysArgAlaAlaIleAspProT
  251 : GAAGAGGATCAATCCGTTCGGATCTGTTGCGCCGGTGGTGAAGCGGGCGGCGATTGACCCGA :  313

  105 : hrSerGluLysLeuValAlaSerMetLeuLysArgCysSerGlnIleLeuThrLysLeuMet :  124
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        hrSerGluLysLeuValAlaSerMetLeuLysArgCysSerGlnIleLeuThrLysLeuMet
  314 : CGAGCGAGAAGCTCGTGGCGAGTATGTTGAAGAGGTGTAGCCAGATCTTGACGAAGCTGATG :  373

  125 : LysHisLysPheGlyTrpValPheAsnAlaProValAspValGluGlyLeuLysLeuHisAs :  145
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        LysHisLysPheGlyTrpValPheAsnAlaProValAspValGluGlyLeuLysLeuHisAs
  374 : AAGCACAAGTTTGGTTGGGTTTTCAACGCGCCTGTTGACGTGGAAGGATTGAAGCTCCATGA :  436

  146 : pTyrHisGlnIleValLysSerProMetAspLeuGlyThrValLysTyrAsnLeuGluLysH :  166
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        pTyrHisGlnIleValLysSerProMetAspLeuGlyThrValLysTyrAsnLeuGluLysH
  437 : TTACCACCAAATCGTCAAGAGCCCGATGGATCTTGGCACTGTAAAGTATAATCTCGAGAAAC :  499

  167 : isLeuTyrSerSerProHisAspPheAlaSerAspValArgLeuThrPheAsnAsnAlaLeu :  186
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        isLeuTyrSerSerProHisAspPheAlaSerAspValArgLeuThrPheAsnAsnAlaLeu
  500 : ATCTCTACTCTTCGCCACATGATTTCGCTTCGGATGTGAGGCTCACCTTCAACAATGCCTTG :  559

  187 : LeuTyrAsnProLysGlySerAspValAsnPheMetAlaGluGlnLeuLeuLeuGlnPheAs :  207
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        LeuTyrAsnProLysGlySerAspValAsnPheMetAlaGluGlnLeuLeuLeuGlnPheAs
  560 : CTGTACAATCCGAAAGGATCAGACGTGAATTTCATGGCAGAGCAGCTCTTATTGCAGTTCGA :  622

  208 : pGlnMetPheAsnProAlaTyrLysLysPheGluAspGluArgArgArgValLeuGlyPheG :  228
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        pGlnMetPheAsnProAlaTyrLysLysPheGluAspGluArgArgArgValLeuGlyPheG
  623 : TCAGATGTTCAACCCTGCCTACAAGAAGTTTGAGGACGAGCGGCGCCGGGTGCTAGGGTTCG :  685

  229 : lyAsnArgAsnAlaAlaLeuGluValAlaLysSerAspIleAsnThrMetValAlaAlaAsn :  248
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        lyAsnArgAsnAlaAlaLeuGluValAlaLysSerAspIleAsnThrMetValAlaAlaAsn
  686 : GGAATCGAAATGCGGCTCTGGAGGTTGCTAAAAGTGATATCAATACTATGGTGGCGGCAAAT :  745

  249 : LysProAspValValArgSerLysSerThrPheSerAspProProProLeuProLeuLeuPr :  269
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        LysProAspValValArgSerLysSerThrPheSerAspProProProLeuProLeuLeuPr
  746 : AAGCCCGATGTGGTGCGATCAAAATCCACATTTTCGGATCCACCACCATTGCCGCTGCTGCC :  808

  270 : oProProLeuGlnValGlnHisSerGlnValLeuArgLysProSerValProAlaProThrS :  290
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        oProProLeuGlnValGlnHisSerGlnValLeuArgLysProSerValProAlaProThrS
  809 : TCCACCGCTGCAGGTTCAGCATTCCCAGGTATTGAGAAAACCGTCAGTCCCTGCACCAACGT :  871

  291 : erProAlaLysProIleValAsnSerArgProValLysLeuProLysProLysAlaLysAsp :  310
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        erProAlaLysProIleValAsnSerArgProValLysLeuProLysProLysAlaLysAsp
  872 : CGCCAGCCAAACCTATAGTTAATTCAAGGCCGGTAAAGCTTCCAAAGCCGAAAGCAAAAGAC :  931

  311 : ProAsnLysArgGlnMetSerTyrGluGluLysAlaLysLeuGlyIleAsnLeuGlnAsnLe :  331
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        ProAsnLysArgGlnMetSerTyrGluGluLysAlaLysLeuGlyIleAsnLeuGlnAsnLe
  932 : CCAAATAAGCGGCAAATGAGCTATGAGGAGAAGGCTAAATTGGGGATCAATTTGCAGAATCT :  994

  332 : uProSerGluLysMetGlyGlnLeuValGlnIleLeuLysLysArgAsnSerHisLeuSerG :  352
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        uProSerGluLysMetGlyGlnLeuValGlnIleLeuLysLysArgAsnSerHisLeuSerG
  995 : TCCGTCGGAGAAGATGGGTCAGCTGGTTCAGATATTGAAGAAGAGGAATAGCCATTTGTCCC : 1057

  353 : lnAspGlyAspGluIleGluLeuAspIleGluAlaValAspThrGluThrLeuTrpGluLeu :  372
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        lnAspGlyAspGluIleGluLeuAspIleGluAlaValAspThrGluThrLeuTrpGluLeu
 1058 : AAGACGGAGATGAGATTGAGCTCGACATAGAGGCCGTTGATACTGAGACCCTTTGGGAGCTT : 1117

  373 : AspArgPheValSerAsnTyrLysLysLeuAlaSerLysIleLysArgGlnAlaLeuMetGl :  393
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        AspArgPheValSerAsnTyrLysLysLeuAlaSerLysIleLysArgGlnAlaLeuMetGl
 1118 : GATAGGTTTGTCAGCAATTACAAGAAGTTGGCCAGCAAGATTAAGCGACAGGCGCTCATGCA : 1180

  394 : nAlaGlnAsnProAlaTyrGlnAsnIleAspGlyPheLys  >>>> Target Intron 1 :  407
        ||||||||||||||||||||||||||||||||||||||||            105 bp    
        nAlaGlnAsnProAlaTyrGlnAsnIleAspGlyPheLys++                    
 1181 : GGCCCAGAATCCCGCTTACCAGAACATTGACGGCTTCAAGgt.................... : 1224

  408 :  >>>>  SerLeuGluSerGluProAlaGluAlaAlaAlaValLysSerLysLysValAspA :  425
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||
             ++SerLeuGluSerGluProAlaGluAlaAlaAlaValLysSerLysLysValAspA
 1225 : .....agTCTCTGGAGAGCGAGCCCGCTGAGGCTGCTGCAGTTAAGAGCAAGAAAGTGGACG : 1381

  426 : laAlaGluGluAspValAspIleGlyGluGluIleProMetGlyAsnTyrProProValVal :  445
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        laAlaGluGluAspValAspIleGlyGluGluIleProMetGlyAsnTyrProProValVal
 1382 : CGGCGGAGGAGGATGTCGACATTGGAGAGGAAATACCGATGGGAAATTACCCACCAGTGGTG : 1441

  446 : IleGluLysAspGlyThrAlaCysAlaSerSerGlySerSerSerSerGlySerSerSerSe :  466
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        IleGluLysAspGlyThrAlaCysAlaSerSerGlySerSerSerSerGlySerSerSerSe
 1442 : ATTGAGAAGGATGGTACTGCTTGTGCTAGTAGTGGGTCTAGCAGTTCCGGTAGTTCAAGCTC : 1504

  467 : rSerSerAspSerSerSerSerSer{A}  >>>> Target Intron 2 >>>>  {sp}S :  476
        |||||||||||||||||||||||||{|}            116 bp           {||}|
        rSerSerAspSerSerSerSerSer{A}++                         ++{sp}S
 1505 : TAGCAGTGATTCGTCCTCATCTAGC{G}gt.........................ag{AT}T : 1650

  477 : erValSerArgSerSerSerGlySerGluSerAspAlaAspSerValGlnSerProPheVal :  496
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        erValSerArgSerSerSerGlySerGluSerAspAlaAspSerValGlnSerProPheVal
 1651 : CAGTTTCAAGAAGTTCCTCTGGCAGCGAGTCGGATGCTGATAGTGTACAATCACCGTTTGTT : 1710

  497 : AlaSerLysGluGlyProGlySer*** :  505
        |||||||||||||||||||||||||||
        AlaSerLysGluGlyProGlySer***
 1711 : GCATCAAAAGAAGGTCCCGGTAGCTAA : 1739

# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.4.0
##date 2023-09-06
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
NZ874	exonerate:protein2genome:local	gene	4	1739	2505	+	.	gene_id 1 ; sequence NZ874 ; gene_orientation + ; identity 100.00 ; similarity 100.00
NZ874	exonerate:protein2genome:local	cds	4	1221	.	+	.	
NZ874	exonerate:protein2genome:local	exon	4	1221	.	+	.	insertions 0 ; deletions 0 ; identity 100.00 ; similarity 100.00
NZ874	exonerate:protein2genome:local	splice5	1222	1223	.	+	.	intron_id 1 ; splice_site "GT"
NZ874	exonerate:protein2genome:local	intron	1222	1326	.	+	.	intron_id 1
NZ874	exonerate:protein2genome:local	splice3	1325	1326	.	+	.	intron_id 0 ; splice_site "AG"
NZ874	exonerate:protein2genome:local	cds	1327	1531	.	+	.	
NZ874	exonerate:protein2genome:local	exon	1327	1531	.	+	.	insertions 0 ; deletions 0 ; identity 100.00 ; similarity 100.00
NZ874	exonerate:protein2genome:local	splice5	1532	1533	.	+	.	intron_id 2 ; splice_site "GT"
NZ874	exonerate:protein2genome:local	intron	1532	1647	.	+	.	intron_id 2
NZ874	exonerate:protein2genome:local	splice3	1646	1647	.	+	.	intron_id 1 ; splice_site "AG"
NZ874	exonerate:protein2genome:local	cds	1648	1739	.	+	.	
NZ874	exonerate:protein2genome:local	exon	1648	1739	.	+	.	insertions 0 ; deletions 0 ; identity 100.00 ; similarity 100.00
NZ874	exonerate:protein2genome:local	similarity	4	1739	2505	+	.	alignment_id 1 ; Query NZ874 ; Align 4 1 1218 ; Align 1327 407 204 ; Align 1650 476 90
# --- END OF GFF DUMP ---
#
